Noi/NOTES/2014-7-2: Difference between revisions

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= Summary of samples and their corresponding index in HiSeq Rapid run data (HiSeq 140627_SN1001) =
= Summary of samples and their corresponding index  =
[[noi:DMR220k_LabNotes#2014| '''Calendar''']]
[[noi:DMR220k_LabNotes#2014| '''Calendar''']]
== HiSeq Rapid run (HiSeq 140627_SN1001) ==
* PE 100+7
* PE 100+7
* [[Noi/NOTES/2014-6-3|NP-RRBS-CTT-5ng, Jun3]]
* [[Noi/NOTES/2014-6-3|NP-RRBS-CTT-5ng, Jun3]]
* [[Noi/NOTES/2014-6-13|NP-RRBS-CTT-100ng, Jun13]]
* [[Noi/NOTES/2014-6-13|NP-RRBS-CTT-100ng, Jun13]]
* [[Noi/NOTES/2014-6-16|NP-RRBS-CTT-100ng]]
* [[Noi/NOTES/2014-6-20|NP-RRBS-PC-P-1ng-p1-Jun20]]
* [[Noi/NOTES/2014-6-20|NP-RRBS-PC-P-1ng-p1-Jun20]]
* [[Noi/NOTES/2014-6-20||NP-RRBS-NC-P-1ng-p1-Jun20]]  
* [[Noi/NOTES/2014-6-20||NP-RRBS-NC-P-1ng-p1-Jun20]]  
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= Summary of samples and their corresponding index in MiSeq run (MiSeq140630) =
== MiSeq run (MiSeq140630) ==
* PE 150+7
* PE 150+7
* [[Noi/NOTES/2014-6-20|NP-RRBS-PC-P-1ng-p2-Jun20]]
* [[Noi/NOTES/2014-6-20|NP-RRBS-PC-P-1ng-p2-Jun20]]

Latest revision as of 22:22, 8 July 2014

Summary of samples and their corresponding index[edit]

Calendar

HiSeq Rapid run (HiSeq 140627_SN1001)[edit]

Original Library ID Combined library ID (for sequencing) Sample ID TruSeq Index Rapid run lane# Input DNA amount (ng) Note
NP-RRBS-CTT-5ng, Jun3 NP_RRBS_CTT_P_20140625 CTT-frozen 5ng_1 9 2 5 Sample from Biochain
NP-RRBS-CTT-5ng, Jun3 NP_RRBS_CTT_P_20140625 CTT-frozen 5ng_2 10 2 5 Sample from Biochain
NP-RRBS-CTT-5ng, Jun3 NP_RRBS_CTT_P_20140625 CTT-FFPE 5ng_1 11 2 5 Sample from Biochain
NP-RRBS-CTT-5ng, Jun3 NP_RRBS_CTT_P_20140625 CTT-FFPE 5ng_2 13 2 5 Sample from Biochain
NP-RRBS-CTT-100ng, Jun13 NP_RRBS_CTT_P_20140625 CTT-frozen-100ng_1 18 2 100 Sample from Biochain
NP-RRBS-CTT-100ng, Jun13 NP_RRBS_CTT_P_20140625 CTT-frozen-100ng_2 19 2 100 Sample from Biochain
NP-RRBS-CTT-100ng, Jun13 NP_RRBS_CTT_P_20140625 CTT-FFPE-100ng_1 20 2 100 Sample from Biochain
NP-RRBS-CTT-100ng, Jun13 NP_RRBS_CTT_P_20140625 CTT-FFPE-100ng_2 21 2 100 Sample from Biochain
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-1_1 1 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-1_2 2 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-2_1 4 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-2_2 5 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-4_1 6 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-4_2 7 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-6_1 8 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-6_2 12 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-7_1 14 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PCT-100ng-Jun16 NP_RRBS_PCT_20140625 PC-T-7_2 15 1 100 Solid tumor tissue from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 PC-P-1 1 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 PC-P-2 2 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 PC-P-3 4 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 PC-P-4 5 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 PC-P-5 6 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 PC-P-6 7 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 PC-P-7 8 2 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 PC-P-10 12 2 1 Plasma from UCSD-004 project
NP-RRBS-NC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 NC-P-2 14 2 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 NC-P-3 15 2 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 NC-P-5 16 2 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p1-Jun20 NP_RRBS_CTT_P_20140625 NC-P-6 27 2 1 Normal control plasma from Kang Zhang's lab

MiSeq run (MiSeq140630)[edit]

Original Library ID Sample ID TruSeq Index Input DNA amount (ng) Note
NP-RRBS-PC-P-1ng-p2-Jun20 PC-P-8 10 1 Plasma from UCSD-004 project
NP-RRBS-PC-P-1ng-p2-Jun20 PC-P-9 11 1 Plasma from UCSD-004 project
NP-RRBS-NC-P-1ng-p2-Jun20 NC-P-1 13 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p2-Jun20 NC-P-7 18 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p2-Jun20 NC-P-8 19 1 Normal control plasma from Kang Zhang's lab
NP-RRBS-NC-P-1ng-p2-Jun20 NC-P-9 20 1 Normal control plasma from Kang Zhang's lab
  • UCSD-004 project: Pancreatic cancer samples
  • CTT: Colon tumor tissue from Biochain
  • PC = Pancreatic cancer
  • T: Tissue
  • P: Plasma