Noi/NOTES/2014-9-14: Difference between revisions
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>Noi (Created page with "= Summary of BSPP capture sequencing libraries and their corresponding index = '''Calendar''' == 1) HiSeq Rapid run at Illumina (140912_D00171_0...") |
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= Summary of BSPP | = Summary of BSPP sequencing libraries and their corresponding index = | ||
[[noi:DMR220k_LabNotes#2014| '''Calendar''']] | [[noi:DMR220k_LabNotes#2014| '''Calendar''']] | ||
== 1) HiSeq Rapid run at Illumina (140912_D00171_0588) == | == 1) HiSeq Rapid run at Illumina (140912_D00171_0588) == | ||
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| NP-BSPP_V5A_CRC-ctDNA-Sep17||NC-30||16||WGBS library||100||MONOD V5 setA /CRC||Rapid run/ILMN||1,2||Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. | | NP-BSPP_V5A_CRC-ctDNA-Sep17||NC-30||16||WGBS library||100||MONOD V5 setA /CRC||Rapid run/ILMN||1,2||Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. | ||
|} | |||
== 2) HiSeq Rapid run at Illumina (140912_D00171_0589) == | |||
{| {{table}} class = wikitable | |||
| align="center" style="width:80px;background:#f0f0f0;"|'''Library ID''' | |||
| align="center" style="width:80px;background:#f0f0f0;"|'''Sample ID''' | |||
| align="center" style="width:60px;background:#f0f0f0;"|'''Zhang's lab Index''' | |||
| align="center" style="width:80px;background:#f0f0f0;"|'''Template type''' | |||
| align="center" style="width:80px;background:#f0f0f0;"|'''InputDNA amount (ng)''' | |||
| align="center" style="width:100px;background:#f0f0f0;"|'''BSPP set''' | |||
| align="center" style="width:80px;background:#f0f0f0;"|'''Sequencing platform/at''' | |||
| align="center" style="width:60px;background:#f0f0f0;"|'''Lane #''' | |||
| align="center" style="width:200px;background:#f0f0f0;"|'''Note''' | |||
|- | |||
| NP-BSPP_V5A_CRC-colon-Sep5||6-P-2||17||WGBS library||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. | |||
|- | |||
| NP-BSPP_V5A_CRC-colon-Sep5||6-P-3||18||WGBS library||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. | |||
|- | |||
| NP-BSPP_V5A_CRC-colon-Sep5||6-P-4||19||WGBS library||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. | |||
|- | |||
| NP-BSPP_V5A_CRC-colon-Sep5||6-P-5||20||WGBS library||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. | |||
|- | |||
| NP-BSPP_V5A_CRC-colon-Sep5||6-T-2||23||bis gDNA||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Solid tumor tissue from UCSD-006 project | |||
|- | |||
| NP-BSPP_V5A_CRC-colon-Sep5||6-T-3||24||bis gDNA||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Solid tumor tissue from UCSD-006 project | |||
|- | |||
| NP-BSPP_V5A_CRC-colon-Sep5||6-T-4||25||bis gDNA||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Solid tumor tissue from UCSD-006 project | |||
|- | |||
| NP-BSPP_V5A_CRC-colon-Sep5||6-T-5||26||bis gDNA||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Solid tumor tissue from UCSD-006 project | |||
|} | |} |
Latest revision as of 15:16, 15 September 2014
Summary of BSPP sequencing libraries and their corresponding index[edit]
1) HiSeq Rapid run at Illumina (140912_D00171_0588)[edit]
Library ID | Sample ID | Zhang's lab Index | Template type | InputDNA amount (ng) | BSPP set | Sequencing platform/at | Lane # | Note |
NP-BSPP_V5A_CRC-ctDNA-Sep10 | cfDNA | 4 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | ctDNA from Illumina. WGBS library generated 5ng of ctDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep11 | NORM1-02 P1 | 5 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | ctDNA from Illumina. WGBS library generated 5ng of ctDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep12 | NORM1-03 P1 | 6 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | ctDNA from Illumina. WGBS library generated 5ng of ctDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep13 | COLO2-03 | 7 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | ctDNA from Illumina. WGBS library generated 5ng of ctDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep14 | NC-6 | 13 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep15 | NC-9 | 14 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep16 | NC-27 | 15 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. |
NP-BSPP_V5A_CRC-ctDNA-Sep17 | NC-30 | 16 | WGBS library | 100 | MONOD V5 setA /CRC | Rapid run/ILMN | 1,2 | Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA. |
2) HiSeq Rapid run at Illumina (140912_D00171_0589)[edit]
Library ID | Sample ID | Zhang's lab Index | Template type | InputDNA amount (ng) | BSPP set | Sequencing platform/at | Lane # | Note |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-P-2 | 17 | WGBS library | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-P-3 | 18 | WGBS library | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-P-4 | 19 | WGBS library | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-P-5 | 20 | WGBS library | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA. |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-T-2 | 23 | bis gDNA | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Solid tumor tissue from UCSD-006 project |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-T-3 | 24 | bis gDNA | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Solid tumor tissue from UCSD-006 project |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-T-4 | 25 | bis gDNA | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Solid tumor tissue from UCSD-006 project |
NP-BSPP_V5A_CRC-colon-Sep5 | 6-T-5 | 26 | bis gDNA | 100 | MONOD V5 setA/CRC | Rapid run/ILMN | 1,2 | Solid tumor tissue from UCSD-006 project |