Noi/NOTES/2014-9-14: Difference between revisions

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(Created page with "= Summary of BSPP capture sequencing libraries and their corresponding index = '''Calendar''' == 1) HiSeq Rapid run at Illumina (140912_D00171_0...")
 
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= Summary of BSPP capture sequencing libraries and their corresponding index =
= Summary of BSPP sequencing libraries and their corresponding index =
[[noi:DMR220k_LabNotes#2014| '''Calendar''']]
[[noi:DMR220k_LabNotes#2014| '''Calendar''']]
== 1) HiSeq Rapid run at Illumina (140912_D00171_0588) ==
== 1) HiSeq Rapid run at Illumina (140912_D00171_0588) ==
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| NP-BSPP_V5A_CRC-ctDNA-Sep17||NC-30||16||WGBS library||100||MONOD V5 setA /CRC||Rapid run/ILMN||1,2||Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.
| NP-BSPP_V5A_CRC-ctDNA-Sep17||NC-30||16||WGBS library||100||MONOD V5 setA /CRC||Rapid run/ILMN||1,2||Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.
|}
== 2) HiSeq Rapid run at Illumina (140912_D00171_0589) ==
{| {{table}} class = wikitable
| align="center" style="width:80px;background:#f0f0f0;"|'''Library ID'''
| align="center" style="width:80px;background:#f0f0f0;"|'''Sample ID'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Zhang's lab Index'''
| align="center" style="width:80px;background:#f0f0f0;"|'''Template type'''
| align="center" style="width:80px;background:#f0f0f0;"|'''InputDNA amount (ng)'''
| align="center" style="width:100px;background:#f0f0f0;"|'''BSPP set'''
| align="center" style="width:80px;background:#f0f0f0;"|'''Sequencing platform/at'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Lane #'''
| align="center" style="width:200px;background:#f0f0f0;"|'''Note'''
|-
| NP-BSPP_V5A_CRC-colon-Sep5||6-P-2||17||WGBS library||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Plasma from UCSD-006 project.  WGBS library generated from 1ng ctDNA.
|-
| NP-BSPP_V5A_CRC-colon-Sep5||6-P-3||18||WGBS library||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Plasma from UCSD-006 project.  WGBS library generated from 1ng ctDNA.
|-
| NP-BSPP_V5A_CRC-colon-Sep5||6-P-4||19||WGBS library||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Plasma from UCSD-006 project.  WGBS library generated from 1ng ctDNA.
|-
| NP-BSPP_V5A_CRC-colon-Sep5||6-P-5||20||WGBS library||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Plasma from UCSD-006 project.  WGBS library generated from 1ng ctDNA.
|-
| NP-BSPP_V5A_CRC-colon-Sep5||6-T-2||23||bis gDNA||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Solid tumor tissue from UCSD-006 project
|-
| NP-BSPP_V5A_CRC-colon-Sep5||6-T-3||24||bis gDNA||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Solid tumor tissue from UCSD-006 project
|-
| NP-BSPP_V5A_CRC-colon-Sep5||6-T-4||25||bis gDNA||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Solid tumor tissue from UCSD-006 project
|-
| NP-BSPP_V5A_CRC-colon-Sep5||6-T-5||26||bis gDNA||100||MONOD V5 setA/CRC||Rapid run/ILMN||1,2||Solid tumor tissue from UCSD-006 project
|}
|}

Latest revision as of 15:16, 15 September 2014

Summary of BSPP sequencing libraries and their corresponding index[edit]

Calendar

1) HiSeq Rapid run at Illumina (140912_D00171_0588)[edit]

Library ID Sample ID Zhang's lab Index Template type InputDNA amount (ng) BSPP set Sequencing platform/at Lane # Note
NP-BSPP_V5A_CRC-ctDNA-Sep10 cfDNA 4 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 ctDNA from Illumina. WGBS library generated 5ng of ctDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep11 NORM1-02 P1 5 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 ctDNA from Illumina. WGBS library generated 5ng of ctDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep12 NORM1-03 P1 6 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 ctDNA from Illumina. WGBS library generated 5ng of ctDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep13 COLO2-03 7 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 ctDNA from Illumina. WGBS library generated 5ng of ctDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep14 NC-6 13 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep15 NC-9 14 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep16 NC-27 15 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep17 NC-30 16 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.

2) HiSeq Rapid run at Illumina (140912_D00171_0589)[edit]

Library ID Sample ID Zhang's lab Index Template type InputDNA amount (ng) BSPP set Sequencing platform/at Lane # Note
NP-BSPP_V5A_CRC-colon-Sep5 6-P-2 17 WGBS library 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA.
NP-BSPP_V5A_CRC-colon-Sep5 6-P-3 18 WGBS library 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA.
NP-BSPP_V5A_CRC-colon-Sep5 6-P-4 19 WGBS library 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA.
NP-BSPP_V5A_CRC-colon-Sep5 6-P-5 20 WGBS library 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA.
NP-BSPP_V5A_CRC-colon-Sep5 6-T-2 23 bis gDNA 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Solid tumor tissue from UCSD-006 project
NP-BSPP_V5A_CRC-colon-Sep5 6-T-3 24 bis gDNA 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Solid tumor tissue from UCSD-006 project
NP-BSPP_V5A_CRC-colon-Sep5 6-T-4 25 bis gDNA 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Solid tumor tissue from UCSD-006 project
NP-BSPP_V5A_CRC-colon-Sep5 6-T-5 26 bis gDNA 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Solid tumor tissue from UCSD-006 project