Shicheng Guo: Difference between revisions
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*[[Shicheng:GMPOR|GMPOR: Genome-wide DNA methylation profile of reprogramming]] | *[[Shicheng:GMPOR|GMPOR: Genome-wide DNA methylation profile of reprogramming]] | ||
*[[Shicheng:Twins|NASA twins project: Smoking influence to DNA methylation haplotype]] | *[[Shicheng:Twins|NASA twins project: Smoking influence to DNA methylation haplotype]] | ||
*[[Shicheng: | *[[Shicheng:Deconvolution|IDRE: Integrate Deconvolution to RNA-seq and Epigenetics dataset]] | ||
*[[Shicheng:To-do-List|To-Do-List]] | *[[Shicheng:To-do-List|To-Do-List]] | ||
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*[[Shicheng:LaSalle2012|LaSalle2012PNAS]] | *[[Shicheng:LaSalle2012|LaSalle2012PNAS]] | ||
*[[Shicheng:Pellegrini2015|Pellegrini2015]] | *[[Shicheng:Pellegrini2015|Pellegrini2015]] | ||
*[[Shicheng:Chen2016|Chen2016CellResearch]] | |||
*[[Shicheng:David2016|David2016NatureCommunication]] | |||
*[[Shicheng:Schroeder2013|Schroeder2013PNAS]] | |||
*[[Shicheng:Kevin2014|Kevin2014GenomeBiology]] | |||
*[[Shicheng:Yanhuang2010|Yanhuang2010]] | |||
*[[Shicheng:Feinberg2017|Feinberg2017NG]] | |||
==Codes and Pipeline== | ==Codes and Pipeline== | ||
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*[[Shicheng:torque_PBS| Torque and PBS]] | *[[Shicheng:torque_PBS| Torque and PBS]] | ||
*[[Shicheng:computational_time| Computational Time Estimation]] | *[[Shicheng:computational_time| Computational Time Estimation]] | ||
*[[Shicheng:GREAT-BIOINFOR| BATCH mode of GREAT GO-ANALYSIS]] | |||
==Presentation and Poster== | ==Presentation and Poster== | ||
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== Daily Notebook== | == Daily Notebook== | ||
<calendar> | |||
name=Shicheng:Calendar | |||
format=%name/NOTES/%year-%month-%day | |||
date=2017/04/08 | |||
view=oneyear | |||
</calendar> | |||
<calendar> | <calendar> | ||
name=Shicheng:Calendar | name=Shicheng:Calendar |
Latest revision as of 00:04, 25 January 2017
Scientific Project[edit]
- MONOD: Methylation Haplotyping for Non-invasive Diagnosis
- GMPOR: Genome-wide DNA methylation profile of reprogramming
- NASA twins project: Smoking influence to DNA methylation haplotype
- IDRE: Integrate Deconvolution to RNA-seq and Epigenetics dataset
- To-Do-List
Annotation and PublicData[edit]
- Human Roadmap Epigenome Project
- Research Result Follow
- GEO Methylation Microarray
- TCGA Methylation Dataset
- ENCODE Epigenetics Project
- UCSC Track of Dr. Zhang's Lab
- Publication Collection
- DennisLo2015-PNAS
- Xliu2014-GenomeBiology
- Holger2016-GenomeBiology
- Holger2013-PNAS
- Ziller2013-Nature
- Tang2016CellResearch
- LaSalle2012PNAS
- Pellegrini2015
- Chen2016CellResearch
- David2016NatureCommunication
- Schroeder2013PNAS
- Kevin2014GenomeBiology
- Yanhuang2010
- Feinberg2017NG
Codes and Pipeline[edit]
- Kun's IT Maintenance
- Genomic Data Analysis Pipeline
- BS-Squencing
- De-Convolution
- Statistics and Metric
- GEO Methylation Meta-Analysis
- RRBS Methylation Analysis
- Methylation Haplotype and Loading
- Public tools
- R Script and Figure
- Linux and Perl
- Cheat Sheet
- Software and Analysis Test
- Genome Sequencing and Variation Calling
- Torque and PBS
- Computational Time Estimation
- BATCH mode of GREAT GO-ANALYSIS
Presentation and Poster[edit]
Daily Notebook[edit]
<calendar> name=Shicheng:Calendar format=%name/NOTES/%year-%month-%day date=2017/04/08 view=oneyear </calendar>
<calendar> name=Shicheng:Calendar format=%name/NOTES/%year-%month-%day date=2016/01/05 view=oneyear </calendar>
<calendar> name=Shicheng:Calendar format=%name/NOTES/%year-%month-%day date=2015/04/08 view=oneyear </calendar>