Daniel:Notebook/Haplotyping/BAC-HiC: Difference between revisions

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(Created page with "=Processing BAC and Hi-C Data= Back to Notebook This page describes the data processing for the BAC data in the haplotyping project. For data...")
 
>Djacobse
 
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[[Daniel:Notebook/Haplotyping|Back to Notebook]]
[[Daniel:Notebook/Haplotyping|Back to Notebook]]


This page describes the data processing for the BAC data in the haplotyping project. For data locations, visit the [https://docs.google.com/spreadsheets/d/1gStTrST8MaWWlHeXMeWXVpjsNvRn8HUdeC4gSUbnPxQ/edit#gid=11247187 Data Map].
This page describes the data processing for the BAC-HiC combined data in the haplotyping project. For data locations, visit the [https://docs.google.com/spreadsheets/d/1gStTrST8MaWWlHeXMeWXVpjsNvRn8HUdeC4gSUbnPxQ/edit#gid=11247187 Data Map].
 
==Processing==
 
#The data starts as the uncombined hair files
##[[Media:CombineHAIRS.sh|Merge script for combining]]
##[[Daniel:Notebook/Haplotyping/HiCData|Hi-C Data Processing]] and [[Daniel:Notebook/Haplotyping/BACData|BAC Data Processing]]
#Next, run hapcut in the log likelihood format
##[[Media:Llhapcut.sh|HAPCUT script]]

Latest revision as of 21:29, 9 December 2015

Processing BAC and Hi-C Data[edit]

Back to Notebook

This page describes the data processing for the BAC-HiC combined data in the haplotyping project. For data locations, visit the Data Map.

Processing[edit]

  1. The data starts as the uncombined hair files
    1. Merge script for combining
    2. Hi-C Data Processing and BAC Data Processing
  2. Next, run hapcut in the log likelihood format
    1. HAPCUT script