Daniel:Notebook/Haplotyping/BAC-HiC: Difference between revisions
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>Djacobse (Created page with "=Processing BAC and Hi-C Data= Back to Notebook This page describes the data processing for the BAC data in the haplotyping project. For data...") |
>Djacobse |
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[[Daniel:Notebook/Haplotyping|Back to Notebook]] | [[Daniel:Notebook/Haplotyping|Back to Notebook]] | ||
This page describes the data processing for the BAC data in the haplotyping project. For data locations, visit the [https://docs.google.com/spreadsheets/d/1gStTrST8MaWWlHeXMeWXVpjsNvRn8HUdeC4gSUbnPxQ/edit#gid=11247187 Data Map]. | This page describes the data processing for the BAC-HiC combined data in the haplotyping project. For data locations, visit the [https://docs.google.com/spreadsheets/d/1gStTrST8MaWWlHeXMeWXVpjsNvRn8HUdeC4gSUbnPxQ/edit#gid=11247187 Data Map]. | ||
==Processing== | |||
#The data starts as the uncombined hair files | |||
##[[Media:CombineHAIRS.sh|Merge script for combining]] | |||
##[[Daniel:Notebook/Haplotyping/HiCData|Hi-C Data Processing]] and [[Daniel:Notebook/Haplotyping/BACData|BAC Data Processing]] | |||
#Next, run hapcut in the log likelihood format | |||
##[[Media:Llhapcut.sh|HAPCUT script]] |