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[[Daniel:Notebook/ComboLock|Back to Calendar]] | [[Daniel:Notebook/ComboLock|Back to Calendar]] | ||
This page is a list of experiments performed in ComboLock and the corresponding dates to those | This page is a list of experiments performed in ComboLock and the corresponding dates to those experiments | ||
==2017== | |||
===July 2017=== | |||
<ol> | |||
<li>Protein/Oligo Mixture (7/6/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170706 | |||
</dynamicpagelist> | |||
<li>Multiplex Experiment (7/13/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170713 | |||
</dynamicpagelist> | |||
</ol> | |||
===June 2017=== | |||
<ol> | |||
<li>Sensitivity and Specificity Experiments (6/5/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170605 | |||
</dynamicpagelist> | |||
<li>Antibody Testing (6/14/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170614 | |||
</dynamicpagelist> | |||
</ol> | |||
===May 2017=== | |||
<ol> | |||
<li>BSA Antibody production (5/13/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170513 | |||
</dynamicpagelist> | |||
</ol> | |||
===April 2017=== | |||
<ol> | |||
<li>RCA Test-2 primers "Double Deuce or DD" (4/11/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170411 | |||
</dynamicpagelist> | |||
<li>Production Run-Test final parameters and such; full protocol (4/28/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170428 | |||
</dynamicpagelist> | |||
</ol> | |||
===March 2017=== | |||
<ol> | |||
<li>Version 3 Oligos-Padlock0601 Test (3/1/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170301 | |||
</dynamicpagelist> | |||
<li>Bolt Test-Ligation reaction connecting the C probes for a padlock binding target (3/8/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170308 | |||
</dynamicpagelist> | |||
<li>T4Poly-Testing Circularization methods including t4 polymerase/ligase and hot-starting phusion (3/15/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170315 | |||
</dynamicpagelist> | |||
<li>Creating a Circular/Linear Product for Positive/Negative RCA Controls (3/22/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170322 | |||
</dynamicpagelist> | |||
<li>RCA Test on Circular and Linear Controls (3/26/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170324 | |||
</dynamicpagelist> | |||
</ol> | |||
===February 2017=== | |||
<ol> | |||
<li>Version 2 Oligos Test 2 (2/2/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170202 | |||
</dynamicpagelist> | |||
<li>Version 3 Oligos-Low Temps (2/7/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170207 | |||
</dynamicpagelist> | |||
<li>Beads Binding Test (2/9/2017)-Tests the efficiency of binding for the biotin-template to the beads and especially the C probes to the template. Also focuses on the temperature-dependent efficiency of wash/incubation steps</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170209 | |||
</dynamicpagelist> | |||
</ol> | |||
===January 2017=== | |||
<ol> | |||
<li>Version 2 Oligos - Short Oligonucleotides (1/9/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170106 | |||
</dynamicpagelist> | |||
<li>Version 3 Oligos - Normal Length Adapters, Lock Oligos, Phosphates Attached (1/13/2017)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170113 | |||
</dynamicpagelist> | |||
<li>RCA Test Dilutions - (1/23/2017) - Uses C4-C2 amplicon and Padlock0501 to test circularization and RCA effects</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170123 | |||
</dynamicpagelist> | |||
<li>RCA Time Test - (1/27/2017) - Testing Various RCA conditions incl time</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20170127 | |||
</dynamicpagelist> | |||
</ol> | |||
==2016== | |||
===December 2016=== | |||
<ol> | |||
<li>Mirror C Probe - Overnight capture (12/15/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161215 | |||
</dynamicpagelist> | |||
<li>Mirror C Probe Test (12/13/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161213 | |||
</dynamicpagelist> | |||
</ol> | |||
===November 2016=== | |||
<ol> | |||
<li>Antibody Binding Positive Control Test (11/03/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161103 | |||
</dynamicpagelist> | |||
<li>Cell Test with RCA (11/07/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161107 | |||
</dynamicpagelist> | |||
<li>Antibody Binding Positive Control Test 2 (11/15/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161115 | |||
</dynamicpagelist> | |||
<li>Circularization Test 2 (11/22/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161122 | |||
</dynamicpagelist> | |||
<li>Extended Latch Test (11/29/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161129 | |||
</dynamicpagelist> | |||
</ol> | |||
===October 2016=== | |||
<ol> | <ol> | ||
<li> | <li>C-Probe Positive Control Test (10/05/2016)</li> | ||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161005 | |||
</dynamicpagelist> | |||
<li>Padlock0301 Test (C-Probe Positive Control Template; 10/07/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161007 | |||
</dynamicpagelist> | |||
<li>Padlock0301 Dilutions Test (10/13/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161013 | |||
</dynamicpagelist> | |||
<li>BSA Ab-Oligo Linkage (10/14/2016)</li> | |||
<dynamicpagelist> | <dynamicpagelist> | ||
category=ComboLock | category=ComboLock | ||
category= | category=20161014 | ||
</dynamicpagelist> | |||
<li>Cell Test with Padlock0201 (10/17/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161017 | |||
</dynamicpagelist> | |||
<li>Cell Test 2 (10/18/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161018 | |||
</dynamicpagelist> | |||
<li>Cell Test 3-Time Course Experiment (10/21/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161021 | |||
</dynamicpagelist> | |||
<li>Beads UMI Test (10/27/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161027 | |||
</dynamicpagelist> | |||
<li>Circularization Test (10/31/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20161031 | |||
</dynamicpagelist> | |||
</ol> | |||
===September 2016=== | |||
<ol> | |||
<li>Positive Control Amplicon PCR Test, Primer Concentration (09/22/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160922 | |||
</dynamicpagelist> | |||
<li>PCAmp4 Production (09/28/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160928 | |||
</dynamicpagelist> | |||
<li>PC amplification test using (P12RC/P2) amplification primers(09/29/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160929 | |||
</dynamicpagelist> | |||
<li>Padlock0201 test including primer amplification (Adapter is now primer24 sequence; 09/30/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160930 | |||
</dynamicpagelist> | |||
</ol> | |||
===August 2016=== | |||
<ol> | |||
<li>Positive Control Amplicon Production (08/05/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160805 | |||
</dynamicpagelist> | |||
<li>Positive Control Amplicon Test (08/18/2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160818 | |||
</dynamicpagelist> | </dynamicpagelist> | ||
<li> | <li>Positive Control Amplicon Production 2 (08/23/2016)</li> | ||
<dynamicpagelist> | <dynamicpagelist> | ||
category=ComboLock | category=ComboLock | ||
category= | category=20160823 | ||
</dynamicpagelist> | </dynamicpagelist> | ||
<li> | <li>Positive Control Amplicon Test 2 (08/22/2016)</li> | ||
<dynamicpagelist> | <dynamicpagelist> | ||
category=ComboLock | category=ComboLock | ||
category= | category=20160822 | ||
</dynamicpagelist> | </dynamicpagelist> | ||
<li> | <li>Positive Control Dilution-X2(08/26/2016)</li> | ||
<dynamicpagelist> | <dynamicpagelist> | ||
category=ComboLock | category=ComboLock | ||
category= | category=20160826 | ||
</dynamicpagelist> | </dynamicpagelist> | ||
<li>C Probe SOD1/VIM Test 2</li> | <li>Positive Control-X3 (08/29/2016)</li> | ||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160829 | |||
</dynamicpagelist> | |||
</ol> | |||
===July 2016=== | |||
<ol> | |||
<li>C Probe SOD1/VIM Test 2 (7-1-2016)</li> | |||
<dynamicpagelist> | <dynamicpagelist> | ||
category=ComboLock | category=ComboLock | ||
category=20160701 | category=20160701 | ||
</dynamicpagelist> | </dynamicpagelist> | ||
<li>Sequential Hybridization Test</li> | <li>Sequential Hybridization Test (7-5-2016)</li> | ||
<dynamicpagelist> | <dynamicpagelist> | ||
category=ComboLock | category=ComboLock | ||
category=20160705 | category=20160705 | ||
</dynamicpagelist> | |||
<li>Double Hybridization (C Probes+Antibodies)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160707 | |||
</dynamicpagelist> | |||
<li>Million Fold Test (SOD1)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160711 | |||
</dynamicpagelist> | |||
<li>C Probes (VIM+SOD1) with Stringent Washes</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160718 | |||
</dynamicpagelist> | |||
<li>Latch 100X and Dextran Test</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160725 | |||
</dynamicpagelist> | |||
<li>Phusion Test</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160728 | |||
</dynamicpagelist> | |||
</ol> | |||
===June 2016=== | |||
<ol> | |||
<li>Stage 2 Test (C Probe, VIM, 6-23-2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160623 | |||
</dynamicpagelist> | |||
<li>Antibody Stage 2 Test 1 (6-27-2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160627 | |||
</dynamicpagelist> | |||
<li>Antibody Stage 2 Test 2 (6-28-2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160628 | |||
</dynamicpagelist> | |||
<li>C Probe SOD1/VIM Test 1 (6-29-2016)</li> | |||
<dynamicpagelist> | |||
category=ComboLock | |||
category=20160629 | |||
</dynamicpagelist> | </dynamicpagelist> | ||
</ol> | </ol> |
Latest revision as of 22:35, 13 July 2017
Experiment List[edit]
This page is a list of experiments performed in ComboLock and the corresponding dates to those experiments
2017[edit]
July 2017[edit]
- Protein/Oligo Mixture (7/6/2017) <dynamicpagelist> category=ComboLock category=20170706 </dynamicpagelist>
- Multiplex Experiment (7/13/2017) <dynamicpagelist> category=ComboLock category=20170713 </dynamicpagelist>
June 2017[edit]
- Sensitivity and Specificity Experiments (6/5/2017) <dynamicpagelist> category=ComboLock category=20170605 </dynamicpagelist>
- Antibody Testing (6/14/2017) <dynamicpagelist> category=ComboLock category=20170614 </dynamicpagelist>
May 2017[edit]
- BSA Antibody production (5/13/2017) <dynamicpagelist> category=ComboLock category=20170513 </dynamicpagelist>
April 2017[edit]
- RCA Test-2 primers "Double Deuce or DD" (4/11/2017) <dynamicpagelist> category=ComboLock category=20170411 </dynamicpagelist>
- Production Run-Test final parameters and such; full protocol (4/28/2017) <dynamicpagelist> category=ComboLock category=20170428 </dynamicpagelist>
March 2017[edit]
- Version 3 Oligos-Padlock0601 Test (3/1/2017) <dynamicpagelist> category=ComboLock category=20170301 </dynamicpagelist>
- Bolt Test-Ligation reaction connecting the C probes for a padlock binding target (3/8/2017) <dynamicpagelist> category=ComboLock category=20170308 </dynamicpagelist>
- T4Poly-Testing Circularization methods including t4 polymerase/ligase and hot-starting phusion (3/15/2017) <dynamicpagelist> category=ComboLock category=20170315 </dynamicpagelist>
- Creating a Circular/Linear Product for Positive/Negative RCA Controls (3/22/2017) <dynamicpagelist> category=ComboLock category=20170322 </dynamicpagelist>
- RCA Test on Circular and Linear Controls (3/26/2017) <dynamicpagelist> category=ComboLock category=20170324 </dynamicpagelist>
February 2017[edit]
- Version 2 Oligos Test 2 (2/2/2017) <dynamicpagelist> category=ComboLock category=20170202 </dynamicpagelist>
- Version 3 Oligos-Low Temps (2/7/2017) <dynamicpagelist> category=ComboLock category=20170207 </dynamicpagelist>
- Beads Binding Test (2/9/2017)-Tests the efficiency of binding for the biotin-template to the beads and especially the C probes to the template. Also focuses on the temperature-dependent efficiency of wash/incubation steps <dynamicpagelist> category=ComboLock category=20170209 </dynamicpagelist>
January 2017[edit]
- Version 2 Oligos - Short Oligonucleotides (1/9/2017) <dynamicpagelist> category=ComboLock category=20170106 </dynamicpagelist>
- Version 3 Oligos - Normal Length Adapters, Lock Oligos, Phosphates Attached (1/13/2017) <dynamicpagelist> category=ComboLock category=20170113 </dynamicpagelist>
- RCA Test Dilutions - (1/23/2017) - Uses C4-C2 amplicon and Padlock0501 to test circularization and RCA effects <dynamicpagelist> category=ComboLock category=20170123 </dynamicpagelist>
- RCA Time Test - (1/27/2017) - Testing Various RCA conditions incl time <dynamicpagelist> category=ComboLock category=20170127 </dynamicpagelist>
2016[edit]
December 2016[edit]
- Mirror C Probe - Overnight capture (12/15/2016) <dynamicpagelist> category=ComboLock category=20161215 </dynamicpagelist>
- Mirror C Probe Test (12/13/2016) <dynamicpagelist> category=ComboLock category=20161213 </dynamicpagelist>
November 2016[edit]
- Antibody Binding Positive Control Test (11/03/2016) <dynamicpagelist> category=ComboLock category=20161103 </dynamicpagelist>
- Cell Test with RCA (11/07/2016) <dynamicpagelist> category=ComboLock category=20161107 </dynamicpagelist>
- Antibody Binding Positive Control Test 2 (11/15/2016) <dynamicpagelist> category=ComboLock category=20161115 </dynamicpagelist>
- Circularization Test 2 (11/22/2016) <dynamicpagelist> category=ComboLock category=20161122 </dynamicpagelist>
- Extended Latch Test (11/29/2016) <dynamicpagelist> category=ComboLock category=20161129 </dynamicpagelist>
October 2016[edit]
- C-Probe Positive Control Test (10/05/2016) <dynamicpagelist> category=ComboLock category=20161005 </dynamicpagelist>
- Padlock0301 Test (C-Probe Positive Control Template; 10/07/2016) <dynamicpagelist> category=ComboLock category=20161007 </dynamicpagelist>
- Padlock0301 Dilutions Test (10/13/2016) <dynamicpagelist> category=ComboLock category=20161013 </dynamicpagelist>
- BSA Ab-Oligo Linkage (10/14/2016) <dynamicpagelist> category=ComboLock category=20161014 </dynamicpagelist>
- Cell Test with Padlock0201 (10/17/2016) <dynamicpagelist> category=ComboLock category=20161017 </dynamicpagelist>
- Cell Test 2 (10/18/2016) <dynamicpagelist> category=ComboLock category=20161018 </dynamicpagelist>
- Cell Test 3-Time Course Experiment (10/21/2016) <dynamicpagelist> category=ComboLock category=20161021 </dynamicpagelist>
- Beads UMI Test (10/27/2016) <dynamicpagelist> category=ComboLock category=20161027 </dynamicpagelist>
- Circularization Test (10/31/2016) <dynamicpagelist> category=ComboLock category=20161031 </dynamicpagelist>
September 2016[edit]
- Positive Control Amplicon PCR Test, Primer Concentration (09/22/2016) <dynamicpagelist> category=ComboLock category=20160922 </dynamicpagelist>
- PCAmp4 Production (09/28/2016) <dynamicpagelist> category=ComboLock category=20160928 </dynamicpagelist>
- PC amplification test using (P12RC/P2) amplification primers(09/29/2016) <dynamicpagelist> category=ComboLock category=20160929 </dynamicpagelist>
- Padlock0201 test including primer amplification (Adapter is now primer24 sequence; 09/30/2016) <dynamicpagelist> category=ComboLock category=20160930 </dynamicpagelist>
August 2016[edit]
- Positive Control Amplicon Production (08/05/2016) <dynamicpagelist> category=ComboLock category=20160805 </dynamicpagelist>
- Positive Control Amplicon Test (08/18/2016) <dynamicpagelist> category=ComboLock category=20160818 </dynamicpagelist>
- Positive Control Amplicon Production 2 (08/23/2016) <dynamicpagelist> category=ComboLock category=20160823 </dynamicpagelist>
- Positive Control Amplicon Test 2 (08/22/2016) <dynamicpagelist> category=ComboLock category=20160822 </dynamicpagelist>
- Positive Control Dilution-X2(08/26/2016) <dynamicpagelist> category=ComboLock category=20160826 </dynamicpagelist>
- Positive Control-X3 (08/29/2016) <dynamicpagelist> category=ComboLock category=20160829 </dynamicpagelist>
July 2016[edit]
- C Probe SOD1/VIM Test 2 (7-1-2016) <dynamicpagelist> category=ComboLock category=20160701 </dynamicpagelist>
- Sequential Hybridization Test (7-5-2016) <dynamicpagelist> category=ComboLock category=20160705 </dynamicpagelist>
- Double Hybridization (C Probes+Antibodies) <dynamicpagelist> category=ComboLock category=20160707 </dynamicpagelist>
- Million Fold Test (SOD1) <dynamicpagelist> category=ComboLock category=20160711 </dynamicpagelist>
- C Probes (VIM+SOD1) with Stringent Washes <dynamicpagelist> category=ComboLock category=20160718 </dynamicpagelist>
- Latch 100X and Dextran Test <dynamicpagelist> category=ComboLock category=20160725 </dynamicpagelist>
- Phusion Test <dynamicpagelist> category=ComboLock category=20160728 </dynamicpagelist>
June 2016[edit]
- Stage 2 Test (C Probe, VIM, 6-23-2016) <dynamicpagelist> category=ComboLock category=20160623 </dynamicpagelist>
- Antibody Stage 2 Test 1 (6-27-2016) <dynamicpagelist> category=ComboLock category=20160627 </dynamicpagelist>
- Antibody Stage 2 Test 2 (6-28-2016) <dynamicpagelist> category=ComboLock category=20160628 </dynamicpagelist>
- C Probe SOD1/VIM Test 1 (6-29-2016) <dynamicpagelist> category=ComboLock category=20160629 </dynamicpagelist>