Daniel:Notebook/ComboLock/Sequencing: Difference between revisions

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| align="center" valign="bottom" | 20,21,25-27,29
| align="center" valign="bottom" | 20,21,25-27,29
| valign="bottom" | CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC
| valign="bottom" | CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC
| align="center" |  
| align="center" | [[Daniel:Notebook/ComboLock/2017-6-26|June 26, 2017]]


|- style="font-size:12pt"
|- style="font-size:12pt"
| height="15"  valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-20|DEJ20170610-CLAbPC-01]]
| height="15"  valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-20|DEJ20170610-CLAbPC-01]]
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-14|6/14/17]]
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-14|6/14/17]]
| align="center" valign="bottom" |  
| align="center" valign="bottom" | 30-35
| valign="bottom" |  
| valign="bottom" | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG
| align="center" | [[Daniel:Notebook/ComboLock/2017-6-28|June 28, 2017]]
 
|- style="font-size:12pt"
| height="15"  valign="bottom" | [[Daniel:Notebook/ComboLock/2017-7-11|DEJ20170711-MixPC-01]]
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-7-6|7/6/17]]
| align="center" valign="bottom" | 20-25
| valign="bottom" | CCTGTC,CAACCC,CTCGGA,TCGAAA,ATTCGC,TACTGC
| align="center" |  
| align="center" |  


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===Spring 2017===
===Spring 2017===


====05-08-2016====
 
====06-23-2017====
 
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext>
|- style="background-color:#B7DEE8;font-size:12pt;font-weight:bold" align="center" valign="bottom"
| width="203" height="30" | Sample Name
| width="75" | Experiment Start Date
| width="77" | Indexes
| width="245" | Index Sequences
| width="90" | Results
 
|- style="font-size:12pt"
| height="15"  valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-10|DEJ20170610-CLPCv3-05]]
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-5|6/5/17]]
| align="center" valign="bottom" | 20,21,25-27,29
| valign="bottom" | CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC
| align="center" | [[Daniel:Notebook/ComboLock/2017-6-26|June 26, 2017]]
 
|- style="font-size:12pt"
| height="15"  valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-20|DEJ20170610-CLAbPC-01]]
| align="center" valign="bottom" | [[Daniel:Notebook/ComboLock/2017-6-14|6/14/17]]
| align="center" valign="bottom" | 30-35
| valign="bottom" | TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG
| align="center" | [[Daniel:Notebook/ComboLock/2017-6-28|June 28, 2017]]
 
|}
 
====05-08-2017====


{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext>
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext>

Latest revision as of 18:29, 11 July 2017

Sequencing Lists[edit]

Back to Notebook

This page describes the sequencing samples submitted in the ComboLock project. It keeps track of IDs, etc.

Zhang Lab Indexes

Sequencing Table

Expected length of combolock amplicons with total sequencing length for the forward and reverse directions

Name Length (bp) Forward Seq. Length Reverse Seq. Length
LinkerL 18 18 148
Primer2 18 36 130
BC-C1 8 44 112
Primer4 18 62 104
BCLatch 8 70 86
UMI 8 78 78
Primer6 18 96 70
BC-C2 8 104 52
Primer12 18 122 44
BCPadlock 8 130 26
LinkerR 18 148 18

Master List[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20160630_CLCProbe_Test2 6/23/16 2,3,5,6 CGATGT, TTAGGC, ACAGTG, GCCAAT  
DEJ20160706_CL_P01 6/28/16 1-7 ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC  
DEJ20160706_CL_C02 6/29/16 10-13 TAGCTT, GGCTAC, CTTGTA, CCATGA  
DEJ20160715_C03 7/11/16 16-20 GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC  
DEJ20160722_CL_C04 7/18/16 21,22,23,26,27 CAACCC,CTCGGA,TCGAAA,TCGTGA,TACGCG  
DEJ20160727_CL_C05 7/25/16 9-13 GATCAG,TAGCTT,GGCTAC,CTTGTA,CCATGA  
DEJ20160822_CL_PC01 8/18/16 10-13 TAGCTT,GGCTAC,CTTGTA,CCATGA 8/25/16
DEJ20160826_CL_PC02 8/22/16 33,41,42,44 CGCAAC,GGGAAC,GAAAAG,GCATCC 9/12/16
DEJ20160906_CL_PC03 8/29/16 34-36 AACTGA,ATCGGG,CAAGCA 9/27/16
DEJ201610_CL_PCC01 10/07/16 24,25 ATTCGC,TACTGC 10/20/16
DEJ-CL-RCA01-20161103 10/31/16 30,31 TTAGTG,CACCAC 11/18/16, 11/21/16, 12/06/16


DEJ-CL-CellC01-20161116 11/7/16 25 TACTGC 11/21/16, 12/06/16
DEJ20160109_CLv2_PC 1/6/17 20 CCTGTC
DEJ20160109_CLv3_RCA and here 1/23/17 21-23,25-27 CAACCC,CTCGGA,TCGAAA,TACTGC,TCGTGA,TACGCG
DEJ20170503-CLPCv3-04 4/28/17 20,24-27 CCTGTC,ATTCGC,TACTGC,TCGTGA,TACGCG May 16 2017
DEJ20170610-CLPCv3-05 6/5/17 20,21,25-27,29 CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC June 26, 2017
DEJ20170610-CLAbPC-01 6/14/17 30-35 TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG June 28, 2017
DEJ20170711-MixPC-01 7/6/17 20-25 CCTGTC,CAACCC,CTCGGA,TCGAAA,ATTCGC,TACTGC

Sequencing Runs 2017[edit]

Spring 2017[edit]

06-23-2017[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20170610-CLPCv3-05 6/5/17 20,21,25-27,29 CCTGTC,CAACCC,TACTGC,TCGTGA,TACGCG,ACGAAC June 26, 2017
DEJ20170610-CLAbPC-01 6/14/17 30-35 TTAGTG,CACCAC,GCAAGG,CGCAAC,AACTGA,ATCGGG June 28, 2017

05-08-2017[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20170503-CLPCv3-04 4/28/17 20,24-27 CCTGTC,ATTCGC,TACTGC,TCGTGA,TACGCG May 16 2017

Sequencing Runs 2016[edit]

Summer 2016[edit]

07-08-2016[edit]

Sample Name Experiment Start Date Indexes Index Sequences
DEJ20160630_CLCProbe_Test2 6/23/16 2,3,5,6 CGATGT, TTAGGC, ACAGTG, GCCAAT
DEJ20160706_CL_P01 6/28/16 1-7 ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC
DEJ20160706_CL_C02 6/29/16 10-13 TAGCTT, GGCTAC, CTTGTA, CCATGA

07-15-2016[edit]

Sample Name Experiment Start Date Indexes Index Sequences
DEJ20160630_CLCProbe_Test2 6/23/16 2,3,5,6 CGATGT, TTAGGC, ACAGTG, GCCAAT
DEJ20160706_CL_P01 6/28/16 1-7 ATCACG, CGATGT, TTAGGC, TGACCA, ACAGTG, GCCAAT, CAGATC
DEJ20160706_CL_C02 6/29/16 10-13 TAGCTT, GGCTAC, CTTGTA, CCATGA
DEJ20160715_C03 7/11/16 16-20 GGGGTT, CTCATC, AGTTCA, GACGCA, CCTGTC

08-22-2016[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20160822_CL_PC01 8/18/16 10-13 TAGCTT,GGCTAC,CTTGTA,CCATGA Analysis and Results

08-26-2016[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20160826_CL_PC02 8/22/16 33, 40-42 CGCAAC,TGACGG,GGGAAC,GAAAAG 9/12/16

Fall 2016[edit]

09-12-2016[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20160906_CL_PC03 8/29/16 34-36 AACTGA,ATCGGG,CAAGCA 9/27/16

10-18-2016[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ20161013_CL_PCC01 10/7/16 24,25 ATTCGC,TACTGC 10/20/16

11-10-2016[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ-CL-RCA01-20161103 10/31/16 30,31 TTAGTG,CACCAC 11/18/16

11-17-2016[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ-CL-CellC01-20161116 11/7/16 25 TACTGC 11/21/16
DEJ-CL-RCA01-20161103 10/31/16 30,31 TTAGTG,CACCAC 11/21/16


12-05-2016[edit]

Sample Name Experiment Start Date Indexes Index Sequences Results
DEJ-CL-CellC01-20161116 11/7/16 25 TACTGC 12/6/16
DEJ-CL-RCA01-20161103 10/31/16 30,31 TTAGTG,CACCAC 12/6/16