Sample record: Difference between revisions

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| March||13||Exome||PGP1-CTRL||48.5ng/ul; 30ul||Billy Li (Harvard)||[[Alice:LabNotes/2009-3-13|Alice Li]]
| March||13||Exome||PGP1-CTRL||48.5ng/ul; 30ul||Billy Li (Harvard)||[[Alice:LabNotes/2009-3-13|Alice Li]]||40bp||9,707,995||7,655,774
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| March||13||Exome||PGP1-shaked||46ng/ul; 30ul||Billy Li (Harvard)||[[Alice:LabNotes/2009-3-13|Alice Li]]
| March||13||Exome||PGP1-shaked||46ng/ul; 30ul||Billy Li (Harvard)||[[Alice:LabNotes/2009-3-13|Alice Li]]||40bp||9,424,752||7,561,445
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| May||25||Exome||PGP1E0509A||77nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]
| May||25||Exome||PGP1E0509A||77nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]||76bp||7,471,741||1,086,264
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| May||25||Exome||PGP2E0509A||64nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]
| May||25||Exome||PGP2E0509A||64nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]||76bp||5,014,823||2,595,521
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| May||25||Exome||PGP3E0509A||49.5nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]
| May||25||Exome||PGP3E0509A||49.5nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]||76bp||5,358,442||3,213,790
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| May||25||Exome||NA12878E0509A||60nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]
| May||25||Exome||NA12878E0509A||60nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]||76bp||7,360,495||2,673,495
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| May||25||Exome||PGP1E0509k||19nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]  
| May||25||Exome||PGP1E0509k||19nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]||76bp||3,520,981||2,350,708
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| May||25||Exome||PGP2E0509k||20nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]  
| May||25||Exome||PGP2E0509k||20nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]||76bp||5,095,881||2,568,349
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| May||25||Exome||PGP3E0509k||19nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]  
| May||25||Exome||PGP3E0509k||19nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]||76bp||3,734,068||1,989,542
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| May||25||Exome||NA12878E0509k||33nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]  
| May||25||Exome||NA12878E0509k||33nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]||76bp||3,900,764||778,134
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| May ||26||cpg97K_end sequencing||NA21070*1 100406 captured targets|| 25.3ng/ul (96nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]||[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]
| May ||26||cpg97K_end sequencing||NA21070*1 100406 captured targets|| 25.3ng/ul (96nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]||[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]||40bp||2535463
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| May ||26||cpg97K_end sequencing|| NA21070*1 100406 normalized captured targets|| 23.1ng/ul (87nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]||[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]
| May ||26||cpg97K_end sequencing|| NA21070*1 100406 normalized captured targets|| 23.1ng/ul (87nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]||[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]||40bp||2377687
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| May||29||Exome(end sequencing)||PGP2_052909A||111nM; 15ul||Yuan Gao||[[Alice:LabNotes/2009-5-29|Alice Li]]
| May||29||Exome(end sequencing)||PGP2_052909A||111nM; 15ul||Yuan Gao||[[Alice:LabNotes/2009-5-29|Alice Li]]||40bp||6390979
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| May||29||Exome(end sequencing)||PGP3_052909A||126nM; 15ul||Yuan Gao||[[Alice:LabNotes/2009-5-29|Alice Li]]
| May||29||Exome(end sequencing)||PGP3_052909A||126nM; 15ul||Yuan Gao||[[Alice:LabNotes/2009-5-29|Alice Li]]||40bp||6110991
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Revision as of 21:00, 30 June 2009

  • 2009
Month Date Probe Set Tube label Conc. x vol. Seq facility Lib. Const. Read length # filtered reads # mappable reads
Feb 6 CpG30k_paired end BJ 75.4nM x 15ul; BioGem Jie 36bp x 2 7,662,828 2,535,784
Feb 6 CpG30k_paired end Hybrid_1 87.6nM x 15ul; BioGem Jie 36bp x 2 6,829,142 1,946,531
Feb 6 CpG30k_paired end PGP1_F 106nM x 15ul; BioGem Jie 36bp x 2 8,441,376 2,854,604
Feb 6 CpG30k_paired end HUES12 74.9nM x 15ul; BioGem Jie 36bp x 2 7,404,514 1,424,697
Feb 6 CpG30k_paired end PGP1_iPS1 90.3nM x 15ul; BioGem Jie 36bp x 2 5,617,832 1,899,427
Feb 6 CpG30k_paired end PGP1_L 77.6nM x 15ul; BioGem Jie 36bp x 2 5,258,188 2,220,886
Feb 6 CpG30k_paired end PGP3_L 80.9nM x 15ul; BioGem Jie 36bp x 2 5,286,442 1,838,971
Feb 6 CpG30k_paired end PGP9_L 96.9nM x 15ul; BioGem Jie 36bp x 2 5,689,552 2,292,028
March 13 Exome PGP1-CTRL 48.5ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,707,995 7,655,774
March 13 Exome PGP1-shaked 46ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,424,752 7,561,445
May 25 Exome PGP1E0509A 77nM; 40ul BioGem Alice Li 76bp 7,471,741 1,086,264
May 25 Exome PGP2E0509A 64nM; 40ul BioGem Alice Li 76bp 5,014,823 2,595,521
May 25 Exome PGP3E0509A 49.5nM; 40ul BioGem Alice Li 76bp 5,358,442 3,213,790
May 25 Exome NA12878E0509A 60nM; 40ul BioGem Alice Li 76bp 7,360,495 2,673,495
May 25 Exome PGP1E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,520,981 2,350,708
May 25 Exome PGP2E0509k 20nM; 40ul BioGem Kun Zhang 76bp 5,095,881 2,568,349
May 25 Exome PGP3E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,734,068 1,989,542
May 25 Exome NA12878E0509k 33nM; 40ul BioGem Kun Zhang 76bp 3,900,764 778,134
May 26 cpg97K_end sequencing NA21070*1 100406 captured targets 25.3ng/ul (96nM) x 15ul; Yuan Gao Jie Kun 40bp 2535463
May 26 cpg97K_end sequencing NA21070*1 100406 normalized captured targets 23.1ng/ul (87nM) x 15ul; Yuan Gao Jie Kun 40bp 2377687
May 29 Exome(end sequencing) PGP2_052909A 111nM; 15ul Yuan Gao Alice Li 40bp 6390979
May 29 Exome(end sequencing) PGP3_052909A 126nM; 15ul Yuan Gao Alice Li 40bp 6110991
June 4 Exome PGP5-1-060809 62.5nM; 10ul BioGem Alice Li
June 4 Exome PGP5-2-060809 65.7nM; 10ul BioGem Alice Li
June 4 Exome PGP7-1-060809 75.5nM; 10ul BioGem Alice Li
June 4 Exome PGP7-2-060809 79.7nM; 20ul BioGem Alice Li
June 8 cpg97k DF6-9-9_P16(4) 11nM x 10ul x 2 lanes; BioGem Jie 76bp 4,688,926
June 8 cpg97k foreskin 15nM x 10ul x 1 lane. BioGem Jie 76bp 3,320,865 1,825,557
June 10 Exome PGP1-3-061009 34nM; 15ul Bing Ren Alice Li
June 10 Exome PGP2-3-061009 25nM; 15ul Bing Ren Alice Li
June 10 Exome PGP3-3-061009 22nM; 15ul Bing Ren Alice Li
June 10 Exome NA12878-3-061009 22nM; 15ul Bing Ren Alice Li
June 10 cpg97k NA21070*1_100406_97k 21.2nM x 14ul; Bing Ren Jie76bp 2,682,703 424,191
June 10 cpg30k DF6-9-9_P16(4)_30k 21.2nM x 14ul; Bing Ren Jie 76bp 918,811
June 10 cpg30k foreskin_30k 21.2nM x 14ul; Bing Ren Jie 76bp 424,770
June 18 Exome PGP5-1-060809 62.5nM; 5ul Bing Ren Alice Li
June 18 Exome PGP5-2-060809 65.7nM; 5ul Bing Ren Alice Li
June 18 Exome PGP7-1-060809 75.5nM; 5ul Bing Ren Alice Li
June 18 CES27k9bp_end sequening Hybrid_1_CES27k9bp 4.3ng/ul (37nM) x 5ul Bing Ren Jie
June 18 CES27k9bp_end sequening BJ_CES27k9bp 7.2ng/ul (62nM) x 5ul Bing Ren Jie
June 18 cpg97k DF6-9-9_P16(4)_97k_repeat 11nM x 5ul Bing Ren Jie
June 18 cpg97k foreskin_97k_repeat 7.5nM x 5ul Bing Ren Jie