Sample record: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
mNo edit summary
mNo edit summary
Line 58: Line 58:
| ||||||||||||
| ||||||||||||
|-
|-
| May ||26||cpg97K_end sequencing||NA21070*1 100406 captured targets|| 25.3ng/ul (96nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]||[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]||40bp||2535463
| May ||26||cpg97K_end sequencing||NA21070*1 100406 captured targets|| 25.3ng/ul (96nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]/[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]||40bp||2535463
|-
|-
| May ||26||cpg97K_end sequencing|| NA21070*1 100406 normalized captured targets|| 23.1ng/ul (87nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]||[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]||40bp||2377687
| May ||26||cpg97K_end sequencing|| NA21070*1 100406 normalized captured targets|| 23.1ng/ul (87nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]/[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]||40bp||2377687
|-
|-
| ||||||||||||
| ||||||||||||
Line 72: Line 72:
| ||||||||||||
| ||||||||||||
|-
|-
| June||4||Exome||PGP5-1-060809||62.5nM; 10ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]
| June||4||Exome||PGP5-1-060809||62.5nM; 10ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]||36bp||14,404,283||10,812,047
|-
|-
| June||4||Exome||PGP5-2-060809||65.7nM; 10ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]
| June||4||Exome||PGP5-2-060809||65.7nM; 10ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]||36bp||14,994,770||11,253,456
|-
|-
| June||4||Exome||PGP7-1-060809||75.5nM; 10ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]
| June||4||Exome||PGP7-1-060809||75.5nM; 10ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]||36bp||13,384,832||9,712,648
|-
|-
| June||4||Exome||PGP7-2-060809||79.7nM; 20ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]
| June||4||Exome||PGP7-2-060809||79.7nM; 20ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]||36bp||14,204,382/13,509,137||10,519,374/9,961,481
|-
|-
| ||||||||||||
| ||||||||||||
Line 90: Line 90:
| ||||||||||||
| ||||||||||||
|-
|-
| June||10||Exome||PGP1-3-061009||34nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]
| June||10||Exome||PGP1-3-061009||34nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]||76bp||5,802,565||
|-
|-
| June||10||Exome||PGP2-3-061009||25nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]
| June||10||Exome||PGP2-3-061009||25nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]||76bp||3,193,644||
|-
|-
| June||10||Exome||PGP3-3-061009||22nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]
| June||10||Exome||PGP3-3-061009||22nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]||76bp||2,465,788||
|-
|-
| June||10||Exome||NA12878-3-061009||22nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]
| June||10||Exome||NA12878-3-061009||22nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]||76bp||1285265||
|-
|-
| June||10||cpg97k||NA21070*1_100406_97k ||21.2nM x 14ul;||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-6-4|Jie]]76bp||2,682,703||424,191
| June||10||cpg97k||NA21070*1_100406_97k ||21.2nM x 14ul;||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-6-4|Jie]]||76bp||2,682,703||424,191
|-
|-
| June||10||cpg30k||DF6-9-9_P16(4)_30k ||21.2nM x 14ul;||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-6-4|Jie]]||76bp||918,811
| June||10||cpg30k||DF6-9-9_P16(4)_30k ||21.2nM x 14ul;||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-6-4|Jie]]||76bp||918,811||
|-
|-
| June||10||cpg30k||foreskin_30k ||21.2nM x 14ul;||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-6-4|Jie]]||76bp||424,770
| June||10||cpg30k||foreskin_30k ||21.2nM x 14ul;||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-6-4|Jie]]||76bp||424,770
Line 108: Line 108:
| ||||||||||||
| ||||||||||||
|-
|-
| June||18||Exome||PGP5-1-060809||62.5nM; 5ul||Bing Ren||[[Alice:LabNotes/2009-6-4|Alice Li]]
| June||18||Exome||PGP5-1-060809||62.5nM; 5ul||Bing Ren||[[Alice:LabNotes/2009-6-4|Alice Li]]||41bp||4,122,460
|-
|-
| June||18||Exome||PGP5-2-060809||65.7nM; 5ul||Bing Ren||[[Alice:LabNotes/2009-6-4|Alice Li]]
| June||18||Exome||PGP5-2-060809||65.7nM; 5ul||Bing Ren||[[Alice:LabNotes/2009-6-4|Alice Li]]||41bp||3,907,906
|-
|-
| June||18||Exome||PGP7-1-060809||75.5nM; 5ul||Bing Ren||[[Alice:LabNotes/2009-6-4|Alice Li]]
| June||18||Exome||PGP7-1-060809||75.5nM; 5ul||Bing Ren||[[Alice:LabNotes/2009-6-4|Alice Li]]||41bp||1,419,496
|-
|-
|-
|-
| June||18||CES27k9bp_end sequening||Hybrid_1_CES27k9bp|| 4.3ng/ul (37nM) x 5ul||Bing Ren||[[Jie:LabNotes/ASE/2009-6-10|Jie]]
| June||18||CES27k9bp_end sequening||Hybrid_1_CES27k9bp|| 4.3ng/ul (37nM) x 5ul||Bing Ren||[[Jie:LabNotes/ASE/2009-6-10|Jie]]||41bp||7,484,832
|-
|-
| June||18||CES27k9bp_end sequening|| BJ_CES27k9bp||7.2ng/ul (62nM) x 5ul||Bing Ren||[[Jie:LabNotes/ASE/2009-6-10|Jie]]
| June||18||CES27k9bp_end sequening|| BJ_CES27k9bp||7.2ng/ul (62nM) x 5ul||Bing Ren||[[Jie:LabNotes/ASE/2009-6-10|Jie]]||41bp||5,643,984
|-
|-
| June||18||cpg97k||DF6-9-9_P16(4)_97k_repeat|| 11nM x 5ul||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]
| June||18||cpg97k||DF6-9-9_P16(4)_97k_repeat|| 11nM x 5ul||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]||41bp||4,761,133
|-
|-
| June||18||cpg97k||foreskin_97k_repeat ||7.5nM x 5ul||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]
| June||18||cpg97k||foreskin_97k_repeat ||7.5nM x 5ul||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]||41bp||6,683,303
|-
|-
|  
|  
|}
|}

Revision as of 21:40, 30 June 2009

  • 2009
Month Date Probe Set Tube label Conc. x vol. Seq facility Lib. Const. Read length # filtered reads # mappable reads
Feb 6 CpG30k_paired end BJ 75.4nM x 15ul; BioGem Jie 36bp x 2 7,662,828 2,535,784
Feb 6 CpG30k_paired end Hybrid_1 87.6nM x 15ul; BioGem Jie 36bp x 2 6,829,142 1,946,531
Feb 6 CpG30k_paired end PGP1_F 106nM x 15ul; BioGem Jie 36bp x 2 8,441,376 2,854,604
Feb 6 CpG30k_paired end HUES12 74.9nM x 15ul; BioGem Jie 36bp x 2 7,404,514 1,424,697
Feb 6 CpG30k_paired end PGP1_iPS1 90.3nM x 15ul; BioGem Jie 36bp x 2 5,617,832 1,899,427
Feb 6 CpG30k_paired end PGP1_L 77.6nM x 15ul; BioGem Jie 36bp x 2 5,258,188 2,220,886
Feb 6 CpG30k_paired end PGP3_L 80.9nM x 15ul; BioGem Jie 36bp x 2 5,286,442 1,838,971
Feb 6 CpG30k_paired end PGP9_L 96.9nM x 15ul; BioGem Jie 36bp x 2 5,689,552 2,292,028
March 13 Exome PGP1-CTRL 48.5ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,707,995 7,655,774
March 13 Exome PGP1-shaked 46ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,424,752 7,561,445
May 25 Exome PGP1E0509A 77nM; 40ul BioGem Alice Li 76bp 7,471,741 1,086,264
May 25 Exome PGP2E0509A 64nM; 40ul BioGem Alice Li 76bp 5,014,823 2,595,521
May 25 Exome PGP3E0509A 49.5nM; 40ul BioGem Alice Li 76bp 5,358,442 3,213,790
May 25 Exome NA12878E0509A 60nM; 40ul BioGem Alice Li 76bp 7,360,495 2,673,495
May 25 Exome PGP1E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,520,981 2,350,708
May 25 Exome PGP2E0509k 20nM; 40ul BioGem Kun Zhang 76bp 5,095,881 2,568,349
May 25 Exome PGP3E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,734,068 1,989,542
May 25 Exome NA12878E0509k 33nM; 40ul BioGem Kun Zhang 76bp 3,900,764 778,134
May 26 cpg97K_end sequencing NA21070*1 100406 captured targets 25.3ng/ul (96nM) x 15ul; Yuan Gao Jie/Kun 40bp 2535463
May 26 cpg97K_end sequencing NA21070*1 100406 normalized captured targets 23.1ng/ul (87nM) x 15ul; Yuan Gao Jie/Kun 40bp 2377687
May 29 Exome(end sequencing) PGP2_052909A 111nM; 15ul Yuan Gao Alice Li 40bp 6390979
May 29 Exome(end sequencing) PGP3_052909A 126nM; 15ul Yuan Gao Alice Li 40bp 6110991
June 4 Exome PGP5-1-060809 62.5nM; 10ul BioGem Alice Li 36bp 14,404,283 10,812,047
June 4 Exome PGP5-2-060809 65.7nM; 10ul BioGem Alice Li 36bp 14,994,770 11,253,456
June 4 Exome PGP7-1-060809 75.5nM; 10ul BioGem Alice Li 36bp 13,384,832 9,712,648
June 4 Exome PGP7-2-060809 79.7nM; 20ul BioGem Alice Li 36bp 14,204,382/13,509,137 10,519,374/9,961,481
June 8 cpg97k DF6-9-9_P16(4) 11nM x 10ul x 2 lanes; BioGem Jie 76bp 4,688,926
June 8 cpg97k foreskin 15nM x 10ul x 1 lane. BioGem Jie 76bp 3,320,865 1,825,557
June 10 Exome PGP1-3-061009 34nM; 15ul Bing Ren Alice Li 76bp 5,802,565
June 10 Exome PGP2-3-061009 25nM; 15ul Bing Ren Alice Li 76bp 3,193,644
June 10 Exome PGP3-3-061009 22nM; 15ul Bing Ren Alice Li 76bp 2,465,788
June 10 Exome NA12878-3-061009 22nM; 15ul Bing Ren Alice Li 76bp 1285265
June 10 cpg97k NA21070*1_100406_97k 21.2nM x 14ul; Bing Ren Jie 76bp 2,682,703 424,191
June 10 cpg30k DF6-9-9_P16(4)_30k 21.2nM x 14ul; Bing Ren Jie 76bp 918,811
June 10 cpg30k foreskin_30k 21.2nM x 14ul; Bing Ren Jie 76bp 424,770
June 18 Exome PGP5-1-060809 62.5nM; 5ul Bing Ren Alice Li 41bp 4,122,460
June 18 Exome PGP5-2-060809 65.7nM; 5ul Bing Ren Alice Li 41bp 3,907,906
June 18 Exome PGP7-1-060809 75.5nM; 5ul Bing Ren Alice Li 41bp 1,419,496
June 18 CES27k9bp_end sequening Hybrid_1_CES27k9bp 4.3ng/ul (37nM) x 5ul Bing Ren Jie 41bp 7,484,832
June 18 CES27k9bp_end sequening BJ_CES27k9bp 7.2ng/ul (62nM) x 5ul Bing Ren Jie 41bp 5,643,984
June 18 cpg97k DF6-9-9_P16(4)_97k_repeat 11nM x 5ul Bing Ren Jie 41bp 4,761,133
June 18 cpg97k foreskin_97k_repeat 7.5nM x 5ul Bing Ren Jie 41bp 6,683,303