Jie:LabNotes/CpgSeq/2009-8-4: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
>Jie deng
(New page: ==SNP_ASM analysis in different tissue types== ===SNP_ASM analysis in three cell types derived from one denor=== The input file from expresso.chem.ucsd.edu/kunpaired/SNPOLD/[[Media:SNP_A...)
 
>Jie deng
No edit summary
 
Line 5: Line 5:
  The code is [[Media:SNP_ASM_PGP1.txt|SNP_ASM_PGP1]]
  The code is [[Media:SNP_ASM_PGP1.txt|SNP_ASM_PGP1]]
  The output file is [[Media:SNP_ASM_PGP1_3_cell.txt|SNP_ASM_PGP1_3_cell]]
  The output file is [[Media:SNP_ASM_PGP1_3_cell.txt|SNP_ASM_PGP1_3_cell]]
===SNP_ASM analysis in 4 fibroblast cell lines===
The input file is PGP1F, IMR90, BJ, hFib2.
[[Media:SNP_ASM_fibroblast.txt|SNP_ASM_fibroblast]]
output file [[Media:SNP_ASM_4_fibroblast.txt|SNP_ASM_4_fibroblast]]

Latest revision as of 01:21, 5 August 2009

SNP_ASM analysis in different tissue types[edit]

SNP_ASM analysis in three cell types derived from one denor[edit]

The input file from expresso.chem.ucsd.edu/kunpaired/SNPOLD/SNP_ASM_PGP1L, SNP_ASM_PGP1F, SNP_ASM_PGP1iPS. 
The code is SNP_ASM_PGP1
The output file is SNP_ASM_PGP1_3_cell

SNP_ASM analysis in 4 fibroblast cell lines[edit]

The input file is PGP1F, IMR90, BJ, hFib2.
SNP_ASM_fibroblast
output file SNP_ASM_4_fibroblast