Athurva Gore/LabNotes/2009-9-21: Difference between revisions

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>Ajgore
(New page: {{ AGLabEntry|2009-8-18|2009-8-22 }} =TO DO= * Analyze merged PGP4, 6, and 10 data - need to postprocess * Email Sanjay Nigam - kidney methylation studies * Phylogenetic Tree clustering of...)
 
>Ajgore
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=Exome Resequencing=
=Exome Resequencing=
==IPS and Cancer==
* Check new DF699 and Foreskin Fibroblast Data
* Check new DF699 and Foreskin Fibroblast Data
** Very few reads present; probably not going to be able to draw anything from this.


=Probe Design=
=Probe Design=

Revision as of 17:19, 21 September 2009

Navigation

TO DO

  • Analyze merged PGP4, 6, and 10 data - need to postprocess
  • Email Sanjay Nigam - kidney methylation studies
  • Phylogenetic Tree clustering of PGP and Shendure samples
  • End-to-End Mapping with Trimming; test this approach.
  • Hemophilia - Read over CEGS proposal

Exome Resequencing

IPS and Cancer

  • Check new DF699 and Foreskin Fibroblast Data
    • Very few reads present; probably not going to be able to draw anything from this.

Probe Design

  • Baylor Probe Set is currently running on genome-tech.
  • Jay Lee Probeset
    • Need to pull out dbSNP data from snp129.txt
    • Then, need to run separate job on cDNA targets
    • Make sure conversion script still works