Athurva Gore/LabNotes/2010-1-7: Difference between revisions

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* Map one lane from each flowcell to get a general idea of mapping rate.
* Map one lane from each flowcell to get a general idea of mapping rate.
** Fill in the below table:
** Fill in the below table:
{| {{table}}
{| {{table border=1}}
| align="center" style="background:#f0f0f0;"|'''Flowcell'''
| align="center" style="background:#f0f0f0;"|'''Flowcell'''
| align="center" style="background:#f0f0f0;"|'''Lane'''
| align="center" style="background:#f0f0f0;"|'''Lane'''

Revision as of 23:06, 7 January 2010

PGP

  • If we only use data from October or newer, we have the following data sets:
    • HL013
    • HL024
    • HL025
    • HL029
    • HL019
    • HL014
    • HL028
    • HL015
    • HL027
    • HL030
  • Need to find the mapping rate for each one; can guess its usefulness in the data set this way.
    • Should we incorporate older reads?
  • Map one lane from each flowcell to get a general idea of mapping rate.
    • Fill in the below table:
Flowcell Lane Number of Reads Mapped Reads Mapped Downsampled Reads
HL013
HL024
HL025
HL029
HL019
HL014
HL028
HL015
HL027
HL030

iPS and Cancer

  • Waiting to hear back from Science
    • First advisor didn't really seem to read paper
    • If no response, try with Nature
  • Rewriting as Letter to Nature
    • Guidelines: LINK
    • ~200 word introductory paragraph, ~1500 word text, ~300 word methods summary, ~1000 word methods, and supplementary info
  • Mostly done with rewrite; need to go over text of paper and edit the additions made