Athurva Gore/LabNotes/2010-1-8: Difference between revisions

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* We can use this to predict how many usable reads we have for each data set.
* We can use this to predict how many usable reads we have for each data set.
** Count of reads for each PGP sample:
** Count of reads for each PGP sample:
59,491,092 ./PGP1/HL013_s_1_sequence.txt
64,242,556 ./PGP1/HL024_s_1_sequence.txt
65,626,740 ./PGP1/HL024_s_2_sequence.txt
55,444,064 ./PGP1/HL024_s_3_sequence.txt
49,822,184 ./PGP1/HL024_s_4_sequence.txt
55,110,136 ./PGP2/HL013_s_2_sequence.txt
36,424,692 ./PGP3/HL025_s_1_sequence.txt
42,146,708 ./PGP3/HL013_s_3_sequence.txt
33,484,628 ./PGP4/HL029_s_1_sequence.txt
59,623,024 ./PGP4/HL019_s_4_sequence.txt
62,981,124 ./PGP4/HL019_s_5_sequence.txt
40,698,108 ./PGP5/HL025_s_2_sequence.txt
33,783,896 ./PGP5/HL013_s_4_sequence.txt
68,026,460 ./PGP6/HL019_s_7_sequence.txt
45,199,448 ./PGP6/HL029_s_2_sequence.txt
64,943,636 ./PGP6/HL019_s_6_sequence.txt
66,614,576 ./PGP7/HL025_s_3_sequence.txt
47,862,784 ./PGP7/HL014_s_6_sequence.txt
23,996,492 ./PGP8/HL028_s_8_sequence.txt
57,803,860 ./PGP8/HL014_s_7_sequence.txt
47,824,792 ./PGP8/HL027_s_8_sequence.txt
53,717,748 ./PGP8/HL015_s_1_sequence.txt
57,942,248 ./PGP8/AL006_s_5_sequence.txt
37,242,492 ./PGP8/HL028_s_6_sequence.txt
44,897,076 ./PGP8/HL028_s_7_sequence.txt
55,913,896 ./PGP8/HL015_s_2_sequence.txt
55,743,640 ./PGP8/HL015_s_3_sequence.txt
29,865,916 ./PGP8/HL024_s_6_sequence.txt
49,785,660 ./PGP9/HL014_s_8_sequence.txt
41,364,608 ./PGP9/AL006_s_6_sequence.txt
42,291,296 ./PGP9/HL029_s_3_sequence.txt
54,768,996 ./PGP9/HL015_s_4_sequence.txt
51,651,888 ./PGP9/HL015_s_5_sequence.txt
51,295,068 ./PGP9/HL015_s_6_sequence.txt
58,820,868 ./PGP9/HL030_s_1_sequence.txt
59,802,364 ./PGP9/HL030_s_2_sequence.txt
59,328,716 ./PGP9/HL030_s_3_sequence.txt
38,310,312 ./PGP10/HL029_s_4_sequence.txt
66,123,176 ./PGP10/HL019_s_8_sequence.txt

Revision as of 18:57, 8 January 2010

PGP

  • Dataset mapping table (October through now):
    • HL013 to HL030
Flowcell Lane Reads Times 4 Number of Reads Mapped Reads Mapped Downsampled Reads Mapping Rate % Usable Reads
HL013 1 59491092 14872773 12555897 8987088 0.84 0.6
HL014 6 47862784 11965696 8324230 5959697 0.7 0.5
HL015 1 53717748 13429437 9839373 6031436 0.73 0.45
HL019 4 59623024 14905756 8695192 8691338 0.58 0.58
HL024 1 64242556 16060639 14817937 13563313 0.92 0.84
HL025 1 36424692 9106173 8077318 6247035 0.89 0.69
HL027 8 47824792 11956198 9269899 8819601 0.78 0.74
HL028 6 37242492 9310623 5979563 4630087 0.64 0.5
HL029 1 33484628 8371157 3396996 3355959 0.41 0.4
HL030 1 58820868 14705217 8827261 8492613 0.6 0.58
  • We can use this to predict how many usable reads we have for each data set.
    • Count of reads for each PGP sample:
59,491,092 ./PGP1/HL013_s_1_sequence.txt
64,242,556 ./PGP1/HL024_s_1_sequence.txt
65,626,740 ./PGP1/HL024_s_2_sequence.txt
55,444,064 ./PGP1/HL024_s_3_sequence.txt
49,822,184 ./PGP1/HL024_s_4_sequence.txt
55,110,136 ./PGP2/HL013_s_2_sequence.txt
36,424,692 ./PGP3/HL025_s_1_sequence.txt
42,146,708 ./PGP3/HL013_s_3_sequence.txt
33,484,628 ./PGP4/HL029_s_1_sequence.txt
59,623,024 ./PGP4/HL019_s_4_sequence.txt
62,981,124 ./PGP4/HL019_s_5_sequence.txt
40,698,108 ./PGP5/HL025_s_2_sequence.txt
33,783,896 ./PGP5/HL013_s_4_sequence.txt
68,026,460 ./PGP6/HL019_s_7_sequence.txt
45,199,448 ./PGP6/HL029_s_2_sequence.txt
64,943,636 ./PGP6/HL019_s_6_sequence.txt
66,614,576 ./PGP7/HL025_s_3_sequence.txt
47,862,784 ./PGP7/HL014_s_6_sequence.txt
23,996,492 ./PGP8/HL028_s_8_sequence.txt
57,803,860 ./PGP8/HL014_s_7_sequence.txt
47,824,792 ./PGP8/HL027_s_8_sequence.txt
53,717,748 ./PGP8/HL015_s_1_sequence.txt
57,942,248 ./PGP8/AL006_s_5_sequence.txt
37,242,492 ./PGP8/HL028_s_6_sequence.txt
44,897,076 ./PGP8/HL028_s_7_sequence.txt
55,913,896 ./PGP8/HL015_s_2_sequence.txt
55,743,640 ./PGP8/HL015_s_3_sequence.txt
29,865,916 ./PGP8/HL024_s_6_sequence.txt
49,785,660 ./PGP9/HL014_s_8_sequence.txt
41,364,608 ./PGP9/AL006_s_6_sequence.txt
42,291,296 ./PGP9/HL029_s_3_sequence.txt
54,768,996 ./PGP9/HL015_s_4_sequence.txt
51,651,888 ./PGP9/HL015_s_5_sequence.txt
51,295,068 ./PGP9/HL015_s_6_sequence.txt
58,820,868 ./PGP9/HL030_s_1_sequence.txt
59,802,364 ./PGP9/HL030_s_2_sequence.txt
59,328,716 ./PGP9/HL030_s_3_sequence.txt
38,310,312 ./PGP10/HL029_s_4_sequence.txt
66,123,176 ./PGP10/HL019_s_8_sequence.txt