Athurva Gore/LabNotes/2010-1-27: Difference between revisions

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| align="center" style="background:#f0f0f0;"|'''HL013 + HL025 + ''HL034'', SlideTrim10'''
| align="center" style="background:#f0f0f0;"|'''HL013 + HL025 + ''HL034'', SlideTrim10'''
|-
|-
| align="right" | dbSNP||4071||8643||8093
| dbSNP||align="right"|4071||align="right"|8643||align="right"|8093
|-
|-
| notdbSNP||207||638||486
| notdbSNP||align="right"|207||align="right"|638||align="right"|486
|-
|-
| dbSNP%||95.16%||93.13%||94.34%
| dbSNP%||align="right"|95.16%||align="right"|93.13%||align="right"|94.34%
|}
|}

Revision as of 23:55, 27 January 2010

PGP Data

HL034 PGP5 Data

  • Got some new PGP5 data from HL034
    • Dr. Zhang tried to map it; ended up with a very low dbSNP percentage (~70%)
  • Can we fix it with some trimming?
    • Tried sliding trimmer 5 and 10
    • Merged it into the previous data
    • Got the following results:
HL013 + HL025, SlideTrim5 HL013 + HL025 + HL034, SlideTrim5 HL013 + HL025 + HL034, SlideTrim10
dbSNP 4071 8643 8093
notdbSNP 207 638 486
dbSNP% 95.16% 93.13% 94.34%