AlanFung:LabNotes/CTCF/2010-4-23: Difference between revisions
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>Alan6017518 (Created page with '==Project Update== ===Bottleneck=== *Extreme low amount of ligated product *Low adapter ligation efficiency ===Improvements=== *Start of with high amount of input DNA (500ng & …') |
>Alan6017518 |
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===Improvements=== | ===Improvements=== | ||
*Start of with high amount of input DNA (500ng & 1ug) | *Start of with high amount of input DNA (500ng & 1ug,50ng) | ||
*Increase the amount of adapter and increase annealing time | *Increase the amount of adapter and increase annealing time | ||
Revision as of 17:24, 23 April 2010
Project Update
Bottleneck
- Extreme low amount of ligated product
- Low adapter ligation efficiency
Improvements
- Start of with high amount of input DNA (500ng & 1ug,50ng)
- Increase the amount of adapter and increase annealing time
Quantification of Jurkat PCR Product
Qubit: 48.4ng/ul
Library Prep with new Jurkat PCR product
- Concentration:48.4ng/ul
- BP:100BP
- setup: 1ug, 500ng and -ve control
End Repair
1ug | 500ng | 50ng | -ve | |
DNA | 20.66 | 10.33 | 1.03 | 0 |
End Repair Buffer | 10 | 10 | 10 | 10 |
End Repair Enzyme Mix | 5 | 5 | 5 | 5 |
ddh2o | 64.34 | 74.67 | 83.97 | 85 |
Total Volume | 100 | 100 | 100 | 100 |
- Incubate at 20C for 30 minutes
- EtOH purification resolve with 42ul ddh2o (250ul 100%EtOH, 10ul 3M NaOH, 1ul Glycoblue)