Nongluk (Noi) Plongthongkum: Difference between revisions

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*[[Noi:Targeted bisulfite sequencing|Targeted bisulfite sequencing]]
*[[Noi:Targeted bisulfite sequencing|Targeted bisulfite sequencing]]
** '''Schizophrenia''' (UCLA, Roel Ophoff):  
** '''Schizophrenia''' (UCLA, Roel Ophoff):  
*** BSPP capture:
*** Sample identity check by Dinh (checked after combining three batches of sequencing data):  
*** Sample identity check by Dinh (checked after combining three batches of sequencing data):  
**** Homozygous and heterozygous call for X chromosome: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]]
**** Homozygous SNPs and heterozygous SNPs call for X chromosome: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]]
**** Genetic distance: [[http://genome-tech.ucsd.edu/LabNotes/index.php/File:UCLA_GeneticDistance.pdf]]
**** Genetic distance: [[http://genome-tech.ucsd.edu/LabNotes/index.php/File:UCLA_GeneticDistance.pdf]]
*** Mid-parent offspring (mpo) analysis
*** Mid-parent offspring (mpo) analysis
*** mQTL analysis
**** Preliminary result by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2011-9-27]]
*** mQTL analysis: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-1-24]]
*** ASM analysis
*** ASM analysis
** '''Geographic Astrophy (GA)''' (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
** '''Geographic Astrophy (GA)''' (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
*** Regression analysis by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2011-10-14]]
*** Regression analysis by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2011-10-14]]
**'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464)
**'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464)
*** BSPP capture:
*** ASM analysis:
*[[Noi:Library construction|Library construction (with Dinh)]]
*[[Noi:Library construction|Library construction (with Dinh)]]

Revision as of 17:08, 21 March 2012

Current Projects

  • Targeted bisulfite sequencing
    • Schizophrenia (UCLA, Roel Ophoff):
      • BSPP capture:
      • Sample identity check by Dinh (checked after combining three batches of sequencing data):
        • Homozygous SNPs and heterozygous SNPs call for X chromosome: [[1]]
        • Genetic distance: [[2]]
      • Mid-parent offspring (mpo) analysis
        • Preliminary result by Dr. Zhang: [[3]]
      • mQTL analysis: [[4]]
      • ASM analysis
    • Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
      • Regression analysis by Dr. Zhang: [[5]]
    • HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
      • BSPP capture:
      • ASM analysis:
  • Library construction (with Dinh)