Nongluk (Noi) Plongthongkum: Difference between revisions
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*[[Noi:Targeted bisulfite sequencing|Targeted bisulfite sequencing]] | *[[Noi:Targeted bisulfite sequencing|Targeted bisulfite sequencing]] | ||
** '''Schizophrenia''' (UCLA, Roel Ophoff): | ** '''Schizophrenia''' (UCLA, Roel Ophoff): | ||
*** BSPP capture: | |||
*** Sample identity check by Dinh (checked after combining three batches of sequencing data): | *** Sample identity check by Dinh (checked after combining three batches of sequencing data): | ||
**** Homozygous and heterozygous call for X chromosome: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]] | **** Homozygous SNPs and heterozygous SNPs call for X chromosome: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]] | ||
**** Genetic distance: [[http://genome-tech.ucsd.edu/LabNotes/index.php/File:UCLA_GeneticDistance.pdf]] | **** Genetic distance: [[http://genome-tech.ucsd.edu/LabNotes/index.php/File:UCLA_GeneticDistance.pdf]] | ||
*** Mid-parent offspring (mpo) analysis | *** Mid-parent offspring (mpo) analysis | ||
*** mQTL analysis | **** Preliminary result by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2011-9-27]] | ||
*** mQTL analysis: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-1-24]] | |||
*** ASM analysis | *** ASM analysis | ||
** '''Geographic Astrophy (GA)''' (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh | ** '''Geographic Astrophy (GA)''' (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh | ||
*** Regression analysis by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2011-10-14]] | *** Regression analysis by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2011-10-14]] | ||
**'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464) | **'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464) | ||
*** BSPP capture: | |||
*** ASM analysis: | |||
*[[Noi:Library construction|Library construction (with Dinh)]] | *[[Noi:Library construction|Library construction (with Dinh)]] |
Revision as of 17:08, 21 March 2012
Current Projects
- Targeted bisulfite sequencing
- Schizophrenia (UCLA, Roel Ophoff):
- Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
- Regression analysis by Dr. Zhang: [[5]]
- HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
- BSPP capture:
- ASM analysis:
- Library construction (with Dinh)