Nongluk (Noi) Plongthongkum: Difference between revisions

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*** ASM analysis
*** ASM analysis
** '''Geographic Astrophy (GA)''' (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
** '''Geographic Astrophy (GA)''' (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
*** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-7-28]] Note: this experiment failed in amplification step [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-8-9]]
*** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-7-28]] --> note: this experiment failed in amplification step [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-8-9]]
*** Regression analysis by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2011-10-14]]
*** Regression analysis by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2011-10-14]]
**'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464)
**'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464)

Revision as of 17:25, 21 March 2012

Current Projects

  • Targeted bisulfite sequencing
    • Lab Note: [[1]]
    • Schizophrenia (UCLA, Roel Ophoff):
      • BSPP capture: [[2]]
      • Sample identity check by Dinh (checked after combining three batches of sequencing data):
        • Homozygous SNPs and heterozygous SNPs call for X chromosome: [[3]]
        • Genetic distance: [[4]]
      • Mid-parent offspring (mpo) analysis
        • Preliminary result by Dr. Zhang: [[5]]
      • mQTL analysis: [[6]]
      • ASM analysis
    • Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
      • BSPP capture: [[7]] --> note: this experiment failed in amplification step [[8]]
      • Regression analysis by Dr. Zhang: [[9]]
    • HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
      • BSPP capture:
      • ASM analysis:
    • Randomly tagging primers (with Athurva and Dinh)
  • Library construction (with Dinh)