Nongluk (Noi) Plongthongkum: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
>Noi
No edit summary
>Noi
No edit summary
Line 19: Line 19:
*** ASM analysis:  
*** ASM analysis:  
** '''Randomly tagging primers''' (with Athurva and Dinh)
** '''Randomly tagging primers''' (with Athurva and Dinh)
*** PCR condition optimization: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-1]]
*** PCR condition optimization: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-1]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-2#PCR_set_up]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-4#Part_III]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-5]]
*** Colony PCR and sequence verification by Sanger's sequencing: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-7]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-13]]
 
*[[Noi:Library construction|Library construction (with Dinh)]]
*[[Noi:Library construction|Library construction (with Dinh)]]

Revision as of 17:35, 21 March 2012

Current Projects

  • Targeted bisulfite sequencing
    • Lab Note: [[1]]
    • Schizophrenia (UCLA, Roel Ophoff):
      • BSPP capture: [[2]]
      • Sample identity check by Dinh (checked after combining three batches of sequencing data):
        • Homozygous SNPs and heterozygous SNPs call for X chromosome: [[3]]
        • Genetic distance: [[4]]
      • Mid-parent offspring (mpo) analysis
        • Preliminary result by Dr. Zhang: [[5]]
      • mQTL analysis: [[6]]
      • ASM analysis
    • Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
      • BSPP capture: [[7]] --> note: this experiment failed in amplification step [[8]]
      • Regression analysis by Dr. Zhang: [[9]]
    • HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
      • BSPP capture:
      • ASM analysis:
    • Randomly tagging primers (with Athurva and Dinh)
      • PCR condition optimization: [[10]] [[11]] [[12]] [[13]]
      • Colony PCR and sequence verification by Sanger's sequencing: [[14]] [[15]]