Nongluk (Noi) Plongthongkum: Difference between revisions

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** '''Schizophrenia''' (UCLA, Roel Ophoff):  
** '''Schizophrenia''' (UCLA, Roel Ophoff):  
*** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-8-14]]
*** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-8-14]]
*** Mapping
**** Batch4: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-1-2]]
*** Sample identity check by Dinh (checked after combining three batches of sequencing data):  
*** Sample identity check by Dinh (checked after combining three batches of sequencing data):  
**** Homozygous SNPs and heterozygous SNPs call for X chromosome to identify males vs. females: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]]
**** Homozygous SNPs and heterozygous SNPs call for X chromosome to identify males vs. females: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]]
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**'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464)
**'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464)
*** BSPP capture:  
*** BSPP capture:  
*** Mapping statistic: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-2-2]]
*** ASM analysis:  
*** ASM analysis:  
** '''Randomly tagging primers''' (with Athurva and Dinh)
** '''Randomly tagging primers''' (with Athurva and Dinh)
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*[[Noi:Library construction|Library construction (with Dinh)]]
*[[Noi:Library construction|Library construction (with Dinh)]]
= 2012 =
= 2012 =
<calendar>
<calendar>

Revision as of 18:10, 21 March 2012

Current Projects

  • Targeted bisulfite sequencing
    • Schizophrenia (UCLA, Roel Ophoff):
      • BSPP capture: [[1]]
      • Mapping
      • Sample identity check by Dinh (checked after combining three batches of sequencing data):
        • Homozygous SNPs and heterozygous SNPs call for X chromosome to identify males vs. females: [[3]]
        • Genetic distance: [[4]]
      • Mid-parent offspring (mpo) analysis
        • Preliminary result by Dr. Zhang: [[5]]
      • mQTL analysis: [[6]]
      • ASM analysis
    • Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
      • BSPP capture: [[7]] --> note: this experiment failed in amplification step [[8]]
      • Regression analysis by Dr. Zhang: [[9]]
    • HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
      • BSPP capture:
      • Mapping statistic: [[10]]
      • ASM analysis:
    • Randomly tagging primers (with Athurva and Dinh)
      • PCR condition optimization: [[11]] [[12]] [[13]] [[14]]
      • Colony PCR and sequence verification by Sanger's sequencing: [[15]] [[16]]

2012

<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2012/01/01 view=oneyear </calendar>

2011

<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2011/01/01 view=oneyear </calendar>

2010

<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2010/10/01 view=oneyear </calendar>