Nongluk (Noi) Plongthongkum: Difference between revisions
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** '''Schizophrenia''' (UCLA, Roel Ophoff): | ** '''Schizophrenia''' (UCLA, Roel Ophoff): | ||
*** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-8-14]] | *** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-8-14]] | ||
*** Mapping | |||
**** Batch4: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-1-2]] | |||
*** Sample identity check by Dinh (checked after combining three batches of sequencing data): | *** Sample identity check by Dinh (checked after combining three batches of sequencing data): | ||
**** Homozygous SNPs and heterozygous SNPs call for X chromosome to identify males vs. females: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]] | **** Homozygous SNPs and heterozygous SNPs call for X chromosome to identify males vs. females: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh_2011/NOTES/2011-11-28]] | ||
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**'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464) | **'''HAPMAP project''' (HAPMAP PT01, two families, 1362 and 1464) | ||
*** BSPP capture: | *** BSPP capture: | ||
*** Mapping statistic: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-2-2]] | |||
*** ASM analysis: | *** ASM analysis: | ||
** '''Randomly tagging primers''' (with Athurva and Dinh) | ** '''Randomly tagging primers''' (with Athurva and Dinh) | ||
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*[[Noi:Library construction|Library construction (with Dinh)]] | *[[Noi:Library construction|Library construction (with Dinh)]] | ||
= 2012 = | = 2012 = | ||
<calendar> | <calendar> |
Revision as of 18:10, 21 March 2012
Current Projects
- Targeted bisulfite sequencing
- Schizophrenia (UCLA, Roel Ophoff):
- Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
- HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
- BSPP capture:
- Mapping statistic: [[10]]
- ASM analysis:
- Randomly tagging primers (with Athurva and Dinh)
2012
<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2012/01/01 view=oneyear </calendar>
2011
<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2011/01/01 view=oneyear </calendar>
2010
<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2010/10/01 view=oneyear </calendar>