Nongluk (Noi) Plongthongkum: Difference between revisions

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*** BSPP capture:  
*** BSPP capture:  
*** Mapping statistic: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-2-2]]
*** Mapping statistic: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-2-2]]
*** ASM analysis:  
*** ASM analysis: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2012-2-15#On_ASM_output_data]]
** '''Randomly tagging primers''' (with Athurva and Dinh)
** '''Randomly tagging primers''' (with Athurva and Dinh)
*** PCR condition optimization: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-1]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-2#PCR_set_up]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-4#Part_III]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-5]]
*** PCR condition optimization: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-1]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-2#PCR_set_up]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-4#Part_III]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-9-5]]

Revision as of 18:27, 21 March 2012

Current Projects

  • Targeted bisulfite sequencing
    • Schizophrenia (UCLA, Roel Ophoff):
      • BSPP capture: [[1]]
      • Mapping
      • Sample identity check by Dinh (checked after combining three batches of sequencing data):
        • Homozygous SNPs and heterozygous SNPs call for X chromosome to identify males vs. females: [[3]]
        • Genetic distance: [[4]]
      • Mid-parent offspring (mpo) analysis
        • Preliminary result by Dr. Zhang: [[5]]
      • mQTL analysis: [[6]]
      • ASM analysis
    • Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
      • BSPP capture: [[7]] --> note: this experiment failed in amplification step [[8]]
      • Regression analysis by Dr. Zhang: [[9]]
    • HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
      • BSPP capture:
      • Mapping statistic: [[10]]
      • ASM analysis: [[11]]
    • Randomly tagging primers (with Athurva and Dinh)
      • PCR condition optimization: [[12]] [[13]] [[14]] [[15]]
      • Colony PCR and sequence verification by Sanger's sequencing: [[16]] [[17]]

2012

<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2012/01/01 view=oneyear </calendar>

2011

<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2011/01/01 view=oneyear </calendar>

2010

<calendar> name=Noi DMR220 LabNotes format=%name/NOTES/%year-%month-%day date=2010/10/01 view=oneyear </calendar>