Nongluk (Noi) Plongthongkum: Difference between revisions
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* '''Parkinson's disease (PD) data set from Burnham Institute''' | * '''Parkinson's disease (PD) data set from Burnham Institute''' | ||
** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-2-15]] | ** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-2-15]] | ||
** Mapping to hg18: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-3-17]] | ** Mapping to hg18 (CpG): [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-3-17]] | ||
** Mapping to hg19 (CpG and non-CpG): | |||
* '''Schizophrenia''' (UCLA, Roel Ophoff): | * '''Schizophrenia''' (UCLA, Roel Ophoff): | ||
** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-8-14]] | ** BSPP capture: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-8-14]] |
Revision as of 20:42, 24 March 2012
Labnote
Sample tracking
Current Projects
Targeted bisulfite sequencing
- Parkinson's disease (PD) data set from Burnham Institute
- Schizophrenia (UCLA, Roel Ophoff):
- Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
- HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
- Randomly tagging primers (with Athurva and Dinh)
Protocols
- Probe preparation
- DMR330k probe synthesized by Agilent
- Probe synthesized by LC Sciences