Nongluk (Noi) Plongthongkum: Difference between revisions
Jump to navigation
Jump to search
>Noi No edit summary |
>Noi |
||
Line 39: | Line 39: | ||
** DMR330k probe synthesized by Agilent: | ** DMR330k probe synthesized by Agilent: | ||
*** Original protocol (DMR220k) by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2010-6-8]] | *** Original protocol (DMR220k) by Dr. Zhang: [[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq/2010-6-8]] | ||
*** [[File:DMR330k probe production.doc]] | *** [[File:DMR330k probe production.doc| DMR330k probe production]] | ||
** Probe synthesized by LC Sciences | ** Probe synthesized by LC Sciences | ||
*** Reference protocol: [http://arep.med.harvard.edu/pdf/Porreca07.pdf] | *** Reference protocol: [http://arep.med.harvard.edu/pdf/Porreca07.pdf] | ||
Line 46: | Line 46: | ||
** N2 adapter protocol: Related experiment --> [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-3-18]] | ** N2 adapter protocol: Related experiment --> [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-3-18]] | ||
** Library-free protocol: Related experiment --> [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-5-28]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-6-6]] | ** Library-free protocol: Related experiment --> [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-5-28]] [[http://genome-tech.ucsd.edu/LabNotes/index.php/Noi/NOTES/2011-6-6]] | ||
== [[Noi:Library construction|Library construction (with Dinh)]] == | == [[Noi:Library construction|Library construction (with Dinh)]] == |
Revision as of 00:35, 27 March 2012
Labnote
Sample tracking
Current Projects
Targeted bisulfite sequencing
- Parkinson's disease (PD) data set from Burnham Institute
- Schizophrenia (UCLA, Roel Ophoff):
- Geographic Astrophy (GA) (UCSD, Kang Zhang) Note: most of the data analysis was performed by Dr. Zhang and Dinh
- BSPP capture: [[12]] --> note: this experiment failed in amplification step [[13]]
- Mapping to hg19: File:BSPP AMD-mapping-summary 2011 10 12.xlsx
- Regression analysis by Dr. Zhang: [[14]]
- HAPMAP project (HAPMAP PT01, two families, 1362 and 1464)
- Randomly tagging primers (with Athurva and Dinh)
- ASM analysis of WGBS of NA12878
Protocols
- Probe preparation
- DMR330k probe synthesized by Agilent:
- Original protocol (DMR220k) by Dr. Zhang: [[24]]
- DMR330k probe production
- Probe synthesized by LC Sciences
- DMR330k probe synthesized by Agilent:
- Library construction (BSPP)