Rui Liu: Difference between revisions
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==Current Projects== | |||
* [[dinh:LAB/Bisulfite_Sequencing|Bisulfite Sequencing of CpG Sites (w/ Jie)]] | |||
* [[dinh:COMPUTATIONAL/HIV_Insertion_Site_Sequencing| Insertional Mutagenesis, Sequencing of HIV Insertion Site (w/ Sam & Kyle)]] | |||
* [[dinh:COMPUTATIONAL/GPU_Project|bwalnGPU]] | |||
==Lab Meetings== | |||
* [http://genome-tech.ucsd.edu/LabNotes/upload/b/b9/GPU_Project_9-28-09.pdf] 8-26-09 thru 9-28-09 Slides | |||
* [http://genome-tech.ucsd.edu/LabNotes/upload/b/b5/Dinh-Presentation_October_26,_2009.pdf] October 26, 2009 Slides | |||
* [http://genome-tech.ucsd.edu/LabNotes/upload/d/d2/Dinh_Presentation_November_23%2C_2009.pdf] November 23, 2009 Slides | |||
* [http://genome-tech.ucsd.edu/LabNotes/upload/0/0c/Lab_Meeting_Jan_25_2010.pdf] January 25, 2010 (short slides) | |||
* [http://genome-tech.ucsd.edu/LabNotes/index.php/File:March_8_2010_Lab_Meeting.pdf] March 8, 2010 CpG Methylation | |||
* [[File:7-28-10_Lab_Meeting.pdf ]] July 28, 2010 mQTL CpG-SNP distance distribution, Epigenetic Reprogramming | |||
==Sequencing== | |||
1. Perform quantification of libraries using PhiX | |||
2. Perform Cluster Generation and Sequencing, [http://genome-tech.ucsd.edu/LabNotes/upload/7/71/Dinh_All_In_One_Cluster_Generation.doc Protocol] | |||
3. Run pipeline modules for image analysis, base calling, and sequence alignment. | |||
=Notebook= | |||
<calendar> | |||
name=Dinh | |||
format=%name/NOTES/%year-%month-%day | |||
date=2010/07/01 | |||
view=oneyear | |||
</calendar> |
Revision as of 17:07, 2 December 2010
Current Projects
- Bisulfite Sequencing of CpG Sites (w/ Jie)
- Insertional Mutagenesis, Sequencing of HIV Insertion Site (w/ Sam & Kyle)
- bwalnGPU
Lab Meetings
- [1] 8-26-09 thru 9-28-09 Slides
- [2] October 26, 2009 Slides
- [3] November 23, 2009 Slides
- [4] January 25, 2010 (short slides)
- [5] March 8, 2010 CpG Methylation
- File:7-28-10 Lab Meeting.pdf July 28, 2010 mQTL CpG-SNP distance distribution, Epigenetic Reprogramming
Sequencing
1. Perform quantification of libraries using PhiX 2. Perform Cluster Generation and Sequencing, Protocol 3. Run pipeline modules for image analysis, base calling, and sequence alignment.
Notebook
<calendar> name=Dinh format=%name/NOTES/%year-%month-%day date=2010/07/01 view=oneyear </calendar>