Sam:LabNotes/Microbiome-new/2011-5-8: Difference between revisions
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>Sam Chiang (Created page with '='''Repeat of 1,000 reads BLASTn taxonomic analysis from 04-25-'11 test'''= ==Background== *Test on different parameter setting of blastn #-e 0.01') |
>Sam Chiang No edit summary |
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==Background== | ==Background== | ||
*Test on different parameter | |||
#-e 0.01 | ==Objectives== | ||
*Test on proportional sampling size | |||
#Sampling 1000 reads for the lowest number group. | |||
#Sampling the proportional number of reads for other groups based on fold variance. | |||
*Test different blastn parameter settings: | |||
#Expectation value 10(default) => -e 0.01 | |||
#blastn DUST filter T(default) => F |
Revision as of 16:29, 9 May 2011
Repeat of 1,000 reads BLASTn taxonomic analysis from 04-25-'11 test
Background
Objectives
- Test on proportional sampling size
- Sampling 1000 reads for the lowest number group.
- Sampling the proportional number of reads for other groups based on fold variance.
- Test different blastn parameter settings:
- Expectation value 10(default) => -e 0.01
- blastn DUST filter T(default) => F