Noi:Quicklinks: Difference between revisions

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** PreCR Repair Mix: http://www.neb.com/nebecomm/products/productM0309.asp
** PreCR Repair Mix: http://www.neb.com/nebecomm/products/productM0309.asp
** Dr. Zhang used to mention about designing "well-controlled experiment to test whether pre-treatment with this PreCR Repair Mix can improve either BSPP or tagmentation/PCR?"
** Dr. Zhang used to mention about designing "well-controlled experiment to test whether pre-treatment with this PreCR Repair Mix can improve either BSPP or tagmentation/PCR?"
'''Dinh:COMPUTATIONAL/bisReadMapper''': http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh:COMPUTATIONAL/bisReadMapper<br>

Revision as of 20:30, 20 June 2012

Link to calendar:[[1]]
Install R packages: install.packages("package_name")
SNP 134 data base : on genome-miner: /media/Ext4T/GenomeDB/HsGenome/snp134_snv.txt
genemapster address: genemapster.dynamic.ucsd.edu
http://search.cpan.org/~callahan/Math-CDF-0.1/CDF.pm
R:Data structure: http://www.statmethods.net/input/datatypes.html
R: Graphic parameters, text & symbol size, plotting symbols, lines, colors, fonts, margins and graph size:http://www.statmethods.net/advgraphs/parameters.html
R: color chart:http://research.stowers-institute.org/efg/R/Color/Chart/ColorChart.pdf
Multiple testing correction: MultipleTestCorrection_Agilent

Dinh:COMPUTATIONAL/bisReadMapper: http://genome-tech.ucsd.edu/LabNotes/index.php/Dinh:COMPUTATIONAL/bisReadMapper