Blue:RNA-Seq Libraries: Difference between revisions

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|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id28||10pg UHRR||R06||RNaseIII (5min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx28.txt||
|||[[Blue:RNA-Seq Experiments:09272013|09272013]]||id28||10pg UHRR||R06||RNaseIII (5min)||HL162||Lane 2||kunzhang/seqStore/131220_HL162/s_2_1_Indx28.txt||
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|BL_UHRR/HuNu_N2id21-28_Sept27||[[Blue:RNA-Seq Experiments:09272013|09272013]]||||10pg-100pg UHRR||R06||RNaseIII (5-10min)||||Lane||||
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|BL_huES8_SingleCell_N2id-90_Oct01||[[Blue:RNA-Seq Experiments:10012013|10012013]]||||250pg UHRR||R06||RNaseIII||HL161||Lane (id90)||/home/kunzhang/seqStore/131009_HL161||
|BL_huES8_SingleCell_N2id-90_Oct01||[[Blue:RNA-Seq Experiments:10012013|10012013]]||||250pg UHRR||R06||RNaseIII||HL161||Lane (id90)||/home/kunzhang/seqStore/131009_HL161||

Revision as of 16:53, 6 January 2014

Sequencing Summary Table

Library Experiment ID Sample TSO Condition Seq Run Lane Data Storage Location Analysis
BL-mCherryNPC-N2id81_92-Apr24 04242013 hNPC lo/hi Pool R04 RnaseIII HL152 Lanes 6-8 /home/kunzhang/seqStore/130521_HL152
BL-UHRR-IVT-May28 05282013 UHRR RL.IVT.N6/N9 RNaseIII HL155 Lanes 1,2 (id1,2,4,5) /home/kunzhang/seqStore/130627_HiSeq_RapidRun/BL-UHRR-IVT-May28
BL_mESC_SingleCell_0614 06142013 Single mESCs (60 cells) R04 (one and two step) RNaseIII, 94C 2min HL155 Lane 8 (id81-84) /home/kunzhang/seqStore/130628_HL155
BL_mCherryNPC_0620 06202013 human NPC sorts CD184+CD44- R04 RnaseIII HL155 Lanes1,2 (id1-5, 11-12) /home/kunzhang/seqStore/130628_HL155
BL_mESC_SingleCell_0621 06212013 mESCs (34 cells) R04 (one step) 94C 2min HL155 Lane 8 (id13-18) /home/kunzhang/seqStore/130628_HL155
BL_mNPC_SingleCell_N2id81_Jul25 07252013 Single mNPCs (60) R04 94C 2min HL157 Lane 3 (id81) /home/kunzhang/seqStore/130807_HL157
BL_mNPC_SingleCell_N2id82_Jul25 07252013 Single mNPCs (60) R04 94C 2min HL157 Lane 4 (id82) /home/kunzhang/seqStore/130807_HL157
BL_huES8_SingleCell_N2id85_0820 08202013 Single huESCs (30) R04 RNaseIII HL161 Lane (id85) /home/kunzhang/seqStore/131009_HL161
BL_huES8_SingleCell_N2id86_0820 08202013 Single huESCs (30) R04 RNaseIII HL161 Lane (id86) /home/kunzhang/seqStore/131009_HL161
BL_huES8_SingleCell_N2id87-88_0820 08202013 250pg UHRR R04 RNaseIII HL161 Lane (id87,88) /home/kunzhang/seqStore/131009_HL161
BL_UHRR_N2id9-12_0910 09102013 500pg UHRR R04-R05 RNaseIII, 94C 2min HL160 Lane 3 - 20% (id9-12) /home/kunzhang/seqStore/130925_HL160
BL_UHRR_N2id13-14_0910 09102013 500pg UHRR Smarter RNaseIII, 94C 2min HL161 Lane (id13, 14) /home/kunzhang/seqStore/131009_HL161
BL_UHRR_N2id9,12_Sept18 09182013 1ng UHRR STRT_V2_3,R03 RNaseIII HL161 Lane (id9, 12) /home/kunzhang/seqStore/131009_HL161
BL_UHRR/HuNu_N2id15-20_Sept27 09272013 1ng UHRR, HuNu, msLCM R06 RNAseIII (5-10min) HL161 Lane 5(id15-20) /home/kunzhang/seqStore/131009_HL161
BL_UHRR/HuNu_N2id21-28_Sept27 09272013 id21 100pg UHRR R06 RNaseIII (10min) HL162 Lane 2 kunzhang/seqStore/131220_HL162/s_2_1_Indx21.txt
09272013 id22 100pg UHRR R06 RNaseIII (10min) HL162 Lane 2 kunzhang/seqStore/131220_HL162/s_2_1_Indx22.txt
09272013 id23 100pg UHRR R06 RNaseIII (5min) HL162 Lane 2 kunzhang/seqStore/131220_HL162/s_2_1_Indx23.txt
09272013 id24 100pg UHRR R06 RNaseIII (5min) HL162 Lane 2 kunzhang/seqStore/131220_HL162/s_2_1_Indx24.txt
09272013 id25 10pg UHRR R06 RNaseIII (10min) HL162 Lane 2 kunzhang/seqStore/131220_HL162/s_2_1_Indx25.txt
09272013 id26 10pg UHRR R06 RNaseIII (10min) HL162 Lane 2 kunzhang/seqStore/131220_HL162/s_2_1_Indx26.txt
09272013 id27 10pg UHRR R06 RNaseIII (5min) HL162 Lane 2 kunzhang/seqStore/131220_HL162/s_2_1_Indx27.txt
09272013 id28 10pg UHRR R06 RNaseIII (5min) HL162 Lane 2 kunzhang/seqStore/131220_HL162/s_2_1_Indx28.txt
BL_huES8_SingleCell_N2id-90_Oct01 10012013 250pg UHRR R06 RNaseIII HL161 Lane (id90) /home/kunzhang/seqStore/131009_HL161
BL_huES8_SingleCell_N2id-89_Oct01 10012013 Single huESCs (30) R06 RNaseIII HL161 Lane (id89) /home/kunzhang/seqStore/131009_HL161
BL-LCM-10Cell_N2id1_4,7,8-Oct3 10032013 id1 msLCM 10 cell (C1) R06 RNaseIII HL161 Lane (id1-4, 7, 8) /home/kunzhang/seqStore/131009_HL161
id2 msLCM 10 cell (C3) R06 RNaseIII HL161 Lane (id1-4, 7, 8) /home/kunzhang/seqStore/131009_HL161
id3 msLCM 10 cell(T1) R06 RNaseIII HL161 Lane (id1-4, 7, 8) /home/kunzhang/seqStore/131009_HL161
id4 msLCM 10 cell (T4) R06 RNaseIII HL161 Lane (id1-4, 7, 8) /home/kunzhang/seqStore/131009_HL161
id7 msLCM 100pg R06 RNaseIII HL161 Lane (id1-4, 7, 8) /home/kunzhang/seqStore/131009_HL161
id8 msLCM 100pg R06 RNaseIII HL161 Lane (id1-4, 7, 8) /home/kunzhang/seqStore/131009_HL161
BL_totoRNAseq_10ngUHRR_Nov13 11132013 id1 UHRR(10ng)/ERCC RNaseIII buffer/Ambion PAP(ATP) R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx01.txt
11132013 id2 UHRR(10ng)/ERCC RNaseIII buffer/Ambion PAP(ATP/3'dATP) R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx02.txt
11132013 id3 UHRR(10ng)/ERCC RNaseIII buffer/Ambion PAP(ATP/dATP) R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx03.txt
11132013 id4 UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP) R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx04.txt
11132013 id5 UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP/3'dATP) R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx05.txt
11132013 id6 UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP/dATP) R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx06.txt
11132013 id7 UHRR(10ng)/ERCC RNaseIII buffer/Affymetrix PAP(ATP) then added 3'dATP R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx07.txt
BL_totoRNAseq_1ngUHRR_Dec03 12032013 id81 UHRR(1ng)/ERCC RNaseIII 5min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 8 kunzhang/seqStore/131220_HL162/s_8_1_Indx81.txt
12032013 id82 UHRR(1ng)/ERCC RNaseIII 5min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 8 kunzhang/seqStore/131220_HL162/s_8_1_Indx82.txt
BL_totoRNAseq_1ng_100pgUHRR_Dec06 12062013 id9 UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx09.txt
12062013 id10 UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx10.txt
12062013 id17 UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 30min R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx17.txt
12062013 id18 UHRR(1ng)/ERCC RNaseIII 1min/Affymetrix PAP 30min R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx18.txt
12062013 id11 UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx11.txt
12062013 id12 UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx12.txt
12062013 id19 UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 30min R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx19.txt
12062013 id20 UHRR(100pg)/ERCC RNaseIII 1min/Affymetrix PAP 30min R06 RNaseIII HL162 Lane 3 kunzhang/seqStore/131220_HL162/s_3_1_Indx20.txt
BL_totoRNAseq_10pgUHRR_Dec10 12102013 id89 UHRR(10pg)/ERCC RNaseIII 15sec/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 1 kunzhang/seqStore/131220_HL162/s_1_1_Indx89.txt
12102013 id90 UHRR(10pg)/ERCC RNaseIII 15sec/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 1 kunzhang/seqStore/131220_HL162/s_1_1_Indx90.txt
12102013 id91 UHRR(10pg)/ERCC RNaseIII 30sec/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 1 kunzhang/seqStore/131220_HL162/s_1_1_Indx91.txt
12102013 id92 UHRR(10pg)/ERCC RNaseIII 30sec/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 1 kunzhang/seqStore/131220_HL162/s_1_1_Indx92.txt
12102013 id93 UHRR(10pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 1 kunzhang/seqStore/131220_HL162/s_1_1_Indx93.txt
12102013 id94 UHRR(10pg)/ERCC RNaseIII 1min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 1 kunzhang/seqStore/131220_HL162/s_1_1_Indx94.txt
12102013 id95 UHRR(10pg)/ERCC RNaseIII 5min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 1 kunzhang/seqStore/131220_HL162/s_1_1_Indx95.txt
12102013 id96 UHRR(10pg)/ERCC RNaseIII 5min/Affymetrix PAP 10min R06 RNaseIII HL162 Lane 1 kunzhang/seqStore/131220_HL162/s_1_1_Indx96.txt

Additional Libraries Sequenced

12102012

02122013

02222013

03192013

04252013



Data Analysis

06202013