Daniel:Notebook/GenomeMiner/2013-7-22: Difference between revisions
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''Alternate Pipeline'' (Can be used instead of 1 and 2) | ''Alternate Pipeline'' (Can be used instead of 1 and 2) | ||
samtools view -bS hrcp_fullindex_samout.sam | samtools sort - hrcp_sorted_hl155 | samtools view -bS hrcp_fullindex_samout.sam | samtools sort - hrcp_sorted_hl155 |
Revision as of 18:30, 22 July 2013
HL155
1. Converting Sam to Bam
samtools view -bS hrcp_fullindex_samout.sam > hrcp_hl155.bam
2. Sorting BAM file
samtools sort hrcp_hl155.bam hrcp_sorted_hl155
Alternate Pipeline (Can be used instead of 1 and 2)
samtools view -bS hrcp_fullindex_samout.sam | samtools sort - hrcp_sorted_hl155