Dinh/Dinh 2013/NOTES/2013-10-7: Difference between revisions
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* I mapped the first 1000 unmappable reads with blastn | * I mapped the first 1000 unmappable reads with blastn | ||
$blastn -p blastn -d nt -K 100 - | $blastn -p blastn -d nt -K 100 -e 100 -g F -F "m D" -a 16 -W 7 -i Indx12.fa -o Indx12.bwa.R1.blast | ||
* Result from MEGAN (Indx12, Indx13, Indx14 only): | * Result from MEGAN (Indx12, Indx13, Indx14 only): | ||
[[File:Indx12.bwa.R1.megan.png]] | [[File:Indx12.bwa.R1.megan.png]] | ||
[[File:Indx13.bwa.R1.megan.png]] | [[File:Indx13.bwa.R1.megan.png]] | ||
[[File:Indx14.bwa.R1.megan.png]] | [[File:Indx14.bwa.R1.megan.png]] |
Revision as of 23:13, 7 October 2013
MEGAN analysis of unmapped reads
- I mapped the first 1000 unmappable reads with blastn
$blastn -p blastn -d nt -K 100 -e 100 -g F -F "m D" -a 16 -W 7 -i Indx12.fa -o Indx12.bwa.R1.blast
- Result from MEGAN (Indx12, Indx13, Indx14 only):
File:Indx12.bwa.R1.megan.png File:Indx13.bwa.R1.megan.png File:Indx14.bwa.R1.megan.png