Hosuk:LabNotes/2014-3-24: Difference between revisions
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| align="center" | Ladder || align="center" | ssDNA || align="center" | Original buffer || align="center" | new MnCl2 || align="center" | new Buffer || align="center" | new MnCl2 & Buffer | | align="center" | Ladder || align="center" | ssDNA || align="center" | Original buffer || align="center" | new MnCl2 || align="center" | new Buffer || align="center" | new MnCl2 & Buffer | ||
|- | |- | ||
| align="center" | normalized || align="center" | || align="center" | 100 || align="center" | 89.7 || align="center" | 79.3 || align="center" | 84.9 | | align="center" | normalized || align="center" | || align="center" | '''100''' || align="center" | '''89.7''' || align="center" | '''79.3''' || align="center" | '''84.9''' | ||
|} | |} | ||
[[File:CircLigaseIIBufferTest_edited_2014-03-24.png|450px]] | [[File:CircLigaseIIBufferTest_edited_2014-03-24.png|450px]] |
Revision as of 03:37, 25 March 2014
Home made CircLigase II Reaction Buffer
- CircLigase II buffer is always run out fast.
- Epicentre tech. suggested making buffer by myself.
Reaction Buffer
- 0.33M Tris-acetate + 0.66M Potassium acetate + 5mM DTT
Recipe of each material
1M Potassium acetate | pH 7.5 |
Potassium acetate | 9.82 g |
diH2O | x mL |
Total Volume | 100 mL |
1M Tris-acetate | pH 7.5 |
Tris-base | 12.1 g |
Acetic acid, glacial | 2.85 mL |
diH2O | x mL |
Total Volume | 100 mL |
CircLigase II Test Mix
Test Mix | Final conc. | Volume |
ssDNA template | 10 pmole | 5 uL |
Reaction buffer, 10x | 1x | 2 uL |
MnCl2, 50 mM | 2.5 mM | 1 uL |
Betain 5 M | 1 M | 4 uL |
CircLigase II (5U/uL) | 5 U/uL | 1 uL |
Total Volume | 20 uL |
Result
- Based on the intensity measurement, and comparing to original buffer sample, new buffer is 85% efficiency, not bad.
- new 50mM MnCl2 is made from 1M MnCl2
Lane 1 | 2 | 3 | 4 | 5 | 6 |
Ladder | ssDNA | Original buffer | new MnCl2 | new Buffer | new MnCl2 & Buffer |
normalized | 100 | 89.7 | 79.3 | 84.9 |