Matt:LabNotes/2014-5-13: Difference between revisions
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>Mzcai mNo edit summary |
>Mzcai m (→Procedure) |
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#*Incubate @RT for 15 min | #*Incubate @RT for 15 min | ||
#Aspirate & Wash once with 1X PBS | #Aspirate & Wash once with 1X PBS | ||
#Capture with 100pM | #Capture with 100pM ppMALAT1_dcProbe1 | ||
#*Incubate @45C for 24 hours | #*Incubate @45C for 24 hours | ||
{| {{table}} | {| {{table}} | ||
Line 15: | Line 15: | ||
| 10X Ampligase Buffer||20 | | 10X Ampligase Buffer||20 | ||
|- | |- | ||
| 1nM | | 1nM ppMALAT1_dcProbe1||20 | ||
|- | |- | ||
| 5 U/ul Ampligase||20 | | 5 U/ul Ampligase||20 | ||
Line 53: | Line 53: | ||
#Wash with 1X PBS twice | #Wash with 1X PBS twice | ||
#Quench with 1M Tris pH 8.0 @RT for 30min | #Quench with 1M Tris pH 8.0 @RT for 30min | ||
#Wash with 1X PBS twice | |||
#Add 0.5uM dcProbe1-Cy3 in 30% formamide + 2X SSC | |||
#*Preheat to 75C for 5min | |||
#*Incubate @RT for 10min | |||
#Wash with 2X SSC twice | |||
#Image with Confocal | |||
===Results=== |
Revision as of 17:53, 16 May 2014
MALAT1 Rolonies
Procedure
- After fixing with 10% formalin 15min 37C & then sitting in 70% EtOH, Wash twice with 1X PBS
- Add 140ul 100nM MALAT1_template to wells C2 & B4
- Pre-heat to 85C
- Incubate @RT for 15 min
- Aspirate & Wash once with 1X PBS
- Capture with 100pM ppMALAT1_dcProbe1
- Incubate @45C for 24 hours
Component | Volume |
10X Ampligase Buffer | 20 |
1nM ppMALAT1_dcProbe1 | 20 |
5 U/ul Ampligase | 20 |
H2O | 140 |
Total | 200 |
- Aspirate NO WASH
- Add RCA primer: 1ul FISSEQ_ppRCA in 199ul 2X SSC/30%
- Pre-heat to 60C
- Add 100ul @45C for 15min
- Wash 2X SSC twice
- Wash 0.1X SSC twice
- Add RCA mix
- Incubate 22hrs @ 30C
Component | Volume |
H2O | 171 |
10X Phi29 Buffer | 20 |
25mM dNTP | 2 |
2mM aa-dUTP | 4 |
Phi29 | 3 |
Total | 200 |
- Wash with 1X PBS once
- 4ul BS(PEG)9 in 196ul 1X PBS
- Incubate 1hr @ RT
- Wash with 1X PBS twice
- Quench with 1M Tris pH 8.0 @RT for 30min
- Wash with 1X PBS twice
- Add 0.5uM dcProbe1-Cy3 in 30% formamide + 2X SSC
- Preheat to 75C for 5min
- Incubate @RT for 10min
- Wash with 2X SSC twice
- Image with Confocal