Rui:LabNotes/SingleCell/2014-7-3: Difference between revisions
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[[Image:20chips_detected.png|800px]] | [[Image:20chips_detected.png|800px]] | ||
===ERCC basics=== | |||
* TPM calling of ERCC has some inconsistency for a few samples | |||
* R is unrelated with number of ERCC called | |||
[[Image:ERCC_TPM.png|800px]] | |||
[[Image:ERCC_fpkm.png|800px]] | |||
[[Image:ERCC_r.png|800px]] | |||
===Re-organizing samples for quality filtering=== | |||
* | |||
* |
Revision as of 03:11, 7 July 2014
Primary analysis on 20 chips of hNuc BA8
- Outline ~1000 sets for hNuc BA8
- Singles filtering criteria
- DES -> biomarker
Sample list
Basic mapping statistics
- Each panel is ordered by chips (from 1st to 20th chip).
- Each chip is ordered by 0hNuc, 1hNuc and mhNuc.
File:20chips mapRate-relative.png
File:20chips genomicRegion.png
ERCC basics
- TPM calling of ERCC has some inconsistency for a few samples
- R is unrelated with number of ERCC called