Noi/NOTES/2014-7-7: Difference between revisions

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| align="center" style="width:220px;background:#f0f0f0;"|'''Note'''
| align="center" style="width:220px;background:#f0f0f0;"|'''Note'''
|-
|-
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-1_1||1||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-1_1||1||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-2_2||4||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-2_2||4||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-3_1||5||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-3_1||5||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-4_1||7||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-4_1||7||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-5_1||25||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-5_1||25||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-1_2||2||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-1_2||2||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-2_1||23||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-2_1||23||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-3_2||6||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-3_2||6||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-5_2||10||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-5_2||10||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| NP-RRBS-6T-4_2-set2_100ng-Jun28||NP_RRBS_006T_100ng_20140628||6-T-4_2||8||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
| NP-RRBS-6T-4_2-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-4_2||8||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project
|-
|-
| ||||||||||||||
| ||||||||||||||
|-
|-
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-1_1||13||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-1_1||13||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|-
|-
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-2_1||15||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-2_1||15||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|-
|-
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-3_1||27||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-3_1||27||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|-
|-
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-4_1||19||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-4_1||19||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|-
|-
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-5_1||21||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-5_1||21||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|-
|-
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-1_2||14||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-1_2||14||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|-
|-
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-2_2||16||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-2_2||16||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|-
|-
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-3_2||18||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-3_2||18||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|-
|-
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-4_2||20||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-4_2||20||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|-
|-
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_007T_100ng_20140628||7-T-5_2||22||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
| NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-5_2||22||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project
|}
|}


Line 62: Line 62:
* [[Noi/NOTES/2014-6-29| Library prep]]
* [[Noi/NOTES/2014-6-29| Library prep]]
* Need to double check with Dr. Zhang if he wants to sequence more plasma sequencing library from project UCSD-004-P (PC-P) and normal control (NC-P).
* Need to double check with Dr. Zhang if he wants to sequence more plasma sequencing library from project UCSD-004-P (PC-P) and normal control (NC-P).
{| {{table}} class = wikitable
* Dr. Zhang suggested to sequence more plasma libraries from previous batch
| align="center" style="width:200px;background:#f0f0f0;"|'''Original Library ID'''
** All NC-P libraries
| align="center" style="width:80px;background:#f0f0f0;"|'''Sample ID'''
** PC-P-(2,3,4,8,10). However, I have used up sample PC-P-10 since it's conc. is very low. I need to include the whole pool including PC-P-10 sample for sequencing. Sample PC-PThis mean that I need to sequence more 10 libraries of PC-P libraries instead of 5 libraries.
| align="center" style="width:60px;background:#f0f0f0;"|'''TruSeq Index'''
| align="center" style="width:100px;background:#f0f0f0;"|'''Sequencing platform/at'''
| align="center" style="width:50px;background:#f0f0f0;"|'''Lane #'''
| align="center" style="width:60px;background:#f0f0f0;"|'''Inout DNA amount (ng)'''
| align="center" style="width:220px;background:#f0f0f0;"|'''Note'''
|-
| NP-RRBS-6P_1ng-Jun29||6-P-1||13||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| NP-RRBS-6P_1ng-Jun29||6-P-2||14||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| NP-RRBS-6P_1ng-Jun29||6-P-3||15||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| NP-RRBS-6P_1ng-Jun29||6-P-4||16||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| NP-RRBS-6P_1ng-Jun29||6-P-5||27||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| NP-RRBS-6P_1ng-Jun29||6-P-6||18||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| NP-RRBS-6P_1ng-Jun29||6-P-7||19||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| NP-RRBS-6P_1ng-Jun29||6-P-8||20||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| NP-RRBS-6P_1ng-Jun29||6-P-9||21||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| NP-RRBS-6P_1ng-Jun29||6-P-10||22||Rapid run/ILMN||1||1||Plasma from UCSD-006 project
|-
| ||||||||||||
|-
| NP-RRBS-7P_1ng-Jun29||7-P-1||1||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|-
| NP-RRBS-7P_1ng-Jun29||7-P-2||2||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|-
| NP-RRBS-7P_1ng-Jun29||7-P-3||4||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|-
| NP-RRBS-7P_1ng-Jun29||7-P-4||5||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|-
| NP-RRBS-7P_1ng-Jun29||7-P-5||6||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|-
| NP-RRBS-7P_1ng-Jun29||7-P-6||7||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|-
| NP-RRBS-7P_1ng-Jun29||7-P-7||8||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|-
| NP-RRBS-7P_1ng-Jun29||7-P-8||10||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|-
| NP-RRBS-7P_1ng-Jun29||7-P-9||11||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|-
| NP-RRBS-7P_1ng-Jun29||7-P-10||12||Rapid run/ILMN||2||1||Plasma from UCSD-007 project
|}

Revision as of 19:50, 8 July 2014

Summary of RRBS sequencing libraries and their corresponding index

Calendar

HiSeq Rapid run at IGM ( XXXXXX)

Original Library ID Library ID (for sequencing) Sample ID TruSeq Index Sequencing platform/at Lane # Inout DNA amount (ng) Note
NP-RRBS-6T_set1_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-1_1 1 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-6T_set1_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-2_2 4 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-6T_set1_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-3_1 5 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-6T_set1_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-4_1 7 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-6T_set1_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-5_1 25 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-6T-set2_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-1_2 2 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-6T-set2_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-2_1 23 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-6T-set2_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-3_2 6 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-6T-set2_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-5_2 10 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-6T-4_2-set2_100ng-Jun28 NP_RRBS_6T_100ng_20140628 6-T-4_2 8 Rapid run/IGM 1 100 Solid tumor tissue from UCSD-006 project
NP-RRBS-7T_set1_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-1_1 13 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project
NP-RRBS-7T_set1_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-2_1 15 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project
NP-RRBS-7T_set1_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-3_1 27 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project
NP-RRBS-7T_set1_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-4_1 19 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project
NP-RRBS-7T_set1_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-5_1 21 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project
NP-RRBS-7T_set2_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-1_2 14 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project
NP-RRBS-7T_set2_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-2_2 16 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project
NP-RRBS-7T_set2_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-3_2 18 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project
NP-RRBS-7T_set2_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-4_2 20 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project
NP-RRBS-7T_set2_100ng-Jun28 NP_RRBS_7T_100ng_20140628 7-T-5_2 22 Rapid run/IGM 2 100 Solid tumor tissue from UCSD-007 project

HiSeq Rapid run at Illumina ( XXXXXX)

  • PE 100+7
  • Library prep
  • Need to double check with Dr. Zhang if he wants to sequence more plasma sequencing library from project UCSD-004-P (PC-P) and normal control (NC-P).
  • Dr. Zhang suggested to sequence more plasma libraries from previous batch
    • All NC-P libraries
    • PC-P-(2,3,4,8,10). However, I have used up sample PC-P-10 since it's conc. is very low. I need to include the whole pool including PC-P-10 sample for sequencing. Sample PC-PThis mean that I need to sequence more 10 libraries of PC-P libraries instead of 5 libraries.