Noi/NOTES/2014-7-7: Difference between revisions
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| align="center" style="width:220px;background:#f0f0f0;"|'''Note''' | | align="center" style="width:220px;background:#f0f0f0;"|'''Note''' | ||
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| NP-RRBS-6T_set1_100ng-Jun28|| | | NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-1_1||1||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| NP-RRBS-6T_set1_100ng-Jun28|| | | NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-2_2||4||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| NP-RRBS-6T_set1_100ng-Jun28|| | | NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-3_1||5||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| NP-RRBS-6T_set1_100ng-Jun28|| | | NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-4_1||7||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| NP-RRBS-6T_set1_100ng-Jun28|| | | NP-RRBS-6T_set1_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-5_1||25||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| NP-RRBS-6T-set2_100ng-Jun28|| | | NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-1_2||2||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| NP-RRBS-6T-set2_100ng-Jun28|| | | NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-2_1||23||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| NP-RRBS-6T-set2_100ng-Jun28|| | | NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-3_2||6||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| NP-RRBS-6T-set2_100ng-Jun28|| | | NP-RRBS-6T-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-5_2||10||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| NP-RRBS-6T-4_2-set2_100ng-Jun28|| | | NP-RRBS-6T-4_2-set2_100ng-Jun28||NP_RRBS_6T_100ng_20140628||6-T-4_2||8||Rapid run/IGM||1||100||Solid tumor tissue from UCSD-006 project | ||
|- | |- | ||
| |||||||||||||| | | |||||||||||||| | ||
|- | |- | ||
| NP-RRBS-7T_set1_100ng-Jun28|| | | NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-1_1||13||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|- | |- | ||
| NP-RRBS-7T_set1_100ng-Jun28|| | | NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-2_1||15||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|- | |- | ||
| NP-RRBS-7T_set1_100ng-Jun28|| | | NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-3_1||27||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|- | |- | ||
| NP-RRBS-7T_set1_100ng-Jun28|| | | NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-4_1||19||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|- | |- | ||
| NP-RRBS-7T_set1_100ng-Jun28|| | | NP-RRBS-7T_set1_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-5_1||21||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|- | |- | ||
| NP-RRBS-7T_set2_100ng-Jun28|| | | NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-1_2||14||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|- | |- | ||
| NP-RRBS-7T_set2_100ng-Jun28|| | | NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-2_2||16||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|- | |- | ||
| NP-RRBS-7T_set2_100ng-Jun28|| | | NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-3_2||18||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|- | |- | ||
| NP-RRBS-7T_set2_100ng-Jun28|| | | NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-4_2||20||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|- | |- | ||
| NP-RRBS-7T_set2_100ng-Jun28|| | | NP-RRBS-7T_set2_100ng-Jun28||NP_RRBS_7T_100ng_20140628||7-T-5_2||22||Rapid run/IGM||2||100||Solid tumor tissue from UCSD-007 project | ||
|} | |} | ||
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* [[Noi/NOTES/2014-6-29| Library prep]] | * [[Noi/NOTES/2014-6-29| Library prep]] | ||
* Need to double check with Dr. Zhang if he wants to sequence more plasma sequencing library from project UCSD-004-P (PC-P) and normal control (NC-P). | * Need to double check with Dr. Zhang if he wants to sequence more plasma sequencing library from project UCSD-004-P (PC-P) and normal control (NC-P). | ||
* Dr. Zhang suggested to sequence more plasma libraries from previous batch | |||
** All NC-P libraries | |||
** PC-P-(2,3,4,8,10). However, I have used up sample PC-P-10 since it's conc. is very low. I need to include the whole pool including PC-P-10 sample for sequencing. Sample PC-PThis mean that I need to sequence more 10 libraries of PC-P libraries instead of 5 libraries. | |||
Revision as of 19:50, 8 July 2014
Summary of RRBS sequencing libraries and their corresponding index
HiSeq Rapid run at IGM ( XXXXXX)
- PE 100+7
- Library prep
Original Library ID | Library ID (for sequencing) | Sample ID | TruSeq Index | Sequencing platform/at | Lane # | Inout DNA amount (ng) | Note |
NP-RRBS-6T_set1_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-1_1 | 1 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-6T_set1_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-2_2 | 4 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-6T_set1_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-3_1 | 5 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-6T_set1_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-4_1 | 7 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-6T_set1_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-5_1 | 25 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-6T-set2_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-1_2 | 2 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-6T-set2_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-2_1 | 23 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-6T-set2_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-3_2 | 6 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-6T-set2_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-5_2 | 10 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-6T-4_2-set2_100ng-Jun28 | NP_RRBS_6T_100ng_20140628 | 6-T-4_2 | 8 | Rapid run/IGM | 1 | 100 | Solid tumor tissue from UCSD-006 project |
NP-RRBS-7T_set1_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-1_1 | 13 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
NP-RRBS-7T_set1_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-2_1 | 15 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
NP-RRBS-7T_set1_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-3_1 | 27 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
NP-RRBS-7T_set1_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-4_1 | 19 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
NP-RRBS-7T_set1_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-5_1 | 21 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
NP-RRBS-7T_set2_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-1_2 | 14 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
NP-RRBS-7T_set2_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-2_2 | 16 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
NP-RRBS-7T_set2_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-3_2 | 18 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
NP-RRBS-7T_set2_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-4_2 | 20 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
NP-RRBS-7T_set2_100ng-Jun28 | NP_RRBS_7T_100ng_20140628 | 7-T-5_2 | 22 | Rapid run/IGM | 2 | 100 | Solid tumor tissue from UCSD-007 project |
HiSeq Rapid run at Illumina ( XXXXXX)
- PE 100+7
- Library prep
- Need to double check with Dr. Zhang if he wants to sequence more plasma sequencing library from project UCSD-004-P (PC-P) and normal control (NC-P).
- Dr. Zhang suggested to sequence more plasma libraries from previous batch
- All NC-P libraries
- PC-P-(2,3,4,8,10). However, I have used up sample PC-P-10 since it's conc. is very low. I need to include the whole pool including PC-P-10 sample for sequencing. Sample PC-PThis mean that I need to sequence more 10 libraries of PC-P libraries instead of 5 libraries.