Sam:LabNotes/Microbione/2009-2-5: Difference between revisions

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>Sam Chiang
>Sam Chiang
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==Results==
==Results==
'''FIG.1 Realtime amplification plot (no log in flourescent)'''
'''FIG.1 Realtime amplification plot (no log in flourescent)'''
[[Image:sam020409.jpg|400px|none]]
[[Image:sam020409.jpg|400px|none]]
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'''FIG.2 Realtime amplification plot (with log in flourescent)'''
'''FIG.2 Realtime amplification plot (with log in flourescent)'''
[[Image:sam020409-log.jpg|400px|none]]
[[Image:sam020409-log.jpg|400px|none]]


==Discussion==
==Discussion==
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##The number of amplifications cycles we used is not enough?  
##The number of amplifications cycles we used is not enough?  
##The amplifications are not working? (Primers' specificity? Concentration of templates?)
##The amplifications are not working? (Primers' specificity? Concentration of templates?)


==Suggestion==
==Suggestion==
#Perform the Gel electrophoresis for the amplicons -> check the primer specificity
#Perform the Gel electrophoresis for the amplicons -> check the primer specificity
#Repeat the same reactions using regular PCR (without SYBR)
#Repeat the same reactions using regular PCR (without SYBR)

Revision as of 21:23, 5 February 2009

Follow up: Testing human 18S and Bac (E. coli) 16S primers using realtime PCR

Exp. Design

Template         gDNA      H2O
                --------  ---
Primer: 18S-211  #1   #2   #3    (#1, #2 - replicates)
        18S-306  #4   #5   #6    (#4, #5 - replicates)


Results

FIG.1 Realtime amplification plot (no log in flourescent)


FIG.2 Realtime amplification plot (with log in flourescent)


Discussion

  1. The amplification curves are not distinguishable (Sample vs. Blank) within 20 clycles.
    1. The number of amplifications cycles we used is not enough?
    2. The amplifications are not working? (Primers' specificity? Concentration of templates?)


Suggestion

  1. Perform the Gel electrophoresis for the amplicons -> check the primer specificity
  2. Repeat the same reactions using regular PCR (without SYBR)