Noi/NOTES/2014-9-14: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
>Noi
mNo edit summary
>Noi
mNo edit summary
 
Line 1: Line 1:
= Summary of BSPP capture sequencing libraries and their corresponding index =
= Summary of BSPP sequencing libraries and their corresponding index =
[[noi:DMR220k_LabNotes#2014| '''Calendar''']]
[[noi:DMR220k_LabNotes#2014| '''Calendar''']]
== 1) HiSeq Rapid run at Illumina (140912_D00171_0588) ==
== 1) HiSeq Rapid run at Illumina (140912_D00171_0588) ==

Latest revision as of 15:16, 15 September 2014

Summary of BSPP sequencing libraries and their corresponding index[edit]

Calendar

1) HiSeq Rapid run at Illumina (140912_D00171_0588)[edit]

Library ID Sample ID Zhang's lab Index Template type InputDNA amount (ng) BSPP set Sequencing platform/at Lane # Note
NP-BSPP_V5A_CRC-ctDNA-Sep10 cfDNA 4 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 ctDNA from Illumina. WGBS library generated 5ng of ctDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep11 NORM1-02 P1 5 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 ctDNA from Illumina. WGBS library generated 5ng of ctDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep12 NORM1-03 P1 6 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 ctDNA from Illumina. WGBS library generated 5ng of ctDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep13 COLO2-03 7 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 ctDNA from Illumina. WGBS library generated 5ng of ctDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep14 NC-6 13 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep15 NC-9 14 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep16 NC-27 15 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.
NP-BSPP_V5A_CRC-ctDNA-Sep17 NC-30 16 WGBS library 100 MONOD V5 setA /CRC Rapid run/ILMN 1,2 Normal control plasma from Kang Zhang's lab. WGBS library generated from 1ng cfDNA.

2) HiSeq Rapid run at Illumina (140912_D00171_0589)[edit]

Library ID Sample ID Zhang's lab Index Template type InputDNA amount (ng) BSPP set Sequencing platform/at Lane # Note
NP-BSPP_V5A_CRC-colon-Sep5 6-P-2 17 WGBS library 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA.
NP-BSPP_V5A_CRC-colon-Sep5 6-P-3 18 WGBS library 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA.
NP-BSPP_V5A_CRC-colon-Sep5 6-P-4 19 WGBS library 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA.
NP-BSPP_V5A_CRC-colon-Sep5 6-P-5 20 WGBS library 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Plasma from UCSD-006 project. WGBS library generated from 1ng ctDNA.
NP-BSPP_V5A_CRC-colon-Sep5 6-T-2 23 bis gDNA 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Solid tumor tissue from UCSD-006 project
NP-BSPP_V5A_CRC-colon-Sep5 6-T-3 24 bis gDNA 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Solid tumor tissue from UCSD-006 project
NP-BSPP_V5A_CRC-colon-Sep5 6-T-4 25 bis gDNA 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Solid tumor tissue from UCSD-006 project
NP-BSPP_V5A_CRC-colon-Sep5 6-T-5 26 bis gDNA 100 MONOD V5 setA/CRC Rapid run/ILMN 1,2 Solid tumor tissue from UCSD-006 project