Daniel:Notebook/Haplotyping/SISSORPipeline: Difference between revisions

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(Created page with "=SISSOR Segmentation Pipeline= Back to Haplotyping Notebook == <calendar> name=Daniel:Notebook/Haplotyping format=%name/%year-%month-%day da...")
 
>Djacobse
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[[Daniel:Notebook/Haplotyping|Back to Haplotyping Notebook]]
[[Daniel:Notebook/Haplotyping|Back to Haplotyping Notebook]]


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The purpose of this section is to include data from my recreation/use of Eric's algorithm to properly segment SISSOR data.  Since SISSOR has very low coverage, the samtools targetcut function does not properly identify fragments created in the microfluidic device.
 
[[EricChu:LabNotesMDA/2014-4-16|Eric's Original Algorithm]]
 
==Calendar==


<calendar>
<calendar>

Revision as of 20:20, 2 December 2014

SISSOR Segmentation Pipeline

Back to Haplotyping Notebook

The purpose of this section is to include data from my recreation/use of Eric's algorithm to properly segment SISSOR data. Since SISSOR has very low coverage, the samtools targetcut function does not properly identify fragments created in the microfluidic device.

Eric's Original Algorithm

Calendar

<calendar> name=Daniel:Notebook/Haplotyping format=%name/%year-%month-%day date=2014/02/01 view=oneyear </calendar>