EricChu:LabNotesMDA/2015-1-7: Difference between revisions
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>Ericchu (Created page with "==Mapping New Sequencing Libraries== * These 9 single cell libraries were sequenced in HL175. GM stands for GM20431. # GM Dev9 Oct10 (Index 9-16). Asked for 10 million reads....") |
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==Commands== | ==Commands== | ||
* reference: http://genome-tech.ucsd.edu/LabNotes/index.php/EricChu:LabNotesMDA/2014-8-25 | |||
* txt files were copied to /data_Syn_15T/HL175/ | * txt files were copied to /data_Syn_15T/HL175/ | ||
* Each single cell data have its own folder. | * Each single cell data have its own folder. | ||
* For example, in /data_Syn_15T/HL175/GMDev9Oct10 | * For example, in /data_Syn_15T/HL175/GMDev9Oct10 | ||
* command: nohup ../../batch_bwa_fastq2bam.pl hg19 > EC_GMDev9Oct10_BWA_batch_fastq2bam.log & | * command: nohup ../../batch_bwa_fastq2bam.pl hg19 > EC_GMDev9Oct10_BWA_batch_fastq2bam.log & |
Revision as of 19:56, 7 January 2015
Mapping New Sequencing Libraries
- These 9 single cell libraries were sequenced in HL175. GM stands for GM20431.
- GM Dev9 Oct10 (Index 9-16). Asked for 10 million reads. Sequenced in Lane 1.
- PGP1 Dev7 Oct6 (Index 17-24). Asked for 10 million reads. Sequenced in Lane 1.
- GM Dev9.2 Oct23 (Index 25-32). Asked for 20 million reads. Sequenced in Lane 1. GM Dev9.2 Oct23 (Index 9-24). Asked for 40 million reads. Sequenced in Lane 2.
- GM Dev9.2 Nov4 (Index9-32). Asked for 40 million reads. Sequenced in Lane3.
- GM Dev9 Nov14 (Index9-32). Asked for 40 million reads. Sequenced in Lane4.
- GM Dev9 Nov18 (Index9-32). Asked for 40 million reads. Sequenced in Lane5.
- GM Dev9 Dec2 (Index9-32). Asked for 40 million reads. Sequenced in Lane6.
- GM Dev9 Dec3 (Index9-32). Asked for 40 million reads. Sequenced in Lane7.
- GM Dev7 Dec9 (Index9-32). Asked for 40 million reads. Sequenced in Lane8.
Commands
- reference: http://genome-tech.ucsd.edu/LabNotes/index.php/EricChu:LabNotesMDA/2014-8-25
- txt files were copied to /data_Syn_15T/HL175/
- Each single cell data have its own folder.
- For example, in /data_Syn_15T/HL175/GMDev9Oct10
- command: nohup ../../batch_bwa_fastq2bam.pl hg19 > EC_GMDev9Oct10_BWA_batch_fastq2bam.log &