Daniel:Notebook/Haplotyping/LFR-HiC: Difference between revisions

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>Djacobse
(Created page with "=Processing LFR and Hi-C Data= Back to Notebook This page describes the data processing for the LFR-HiC combined data in the haplotyping proj...")
 
>Djacobse
 
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#The data starts as the uncombined hair files
#The data starts as the uncombined hair files
##[[Media:CombineHAIRS.sh|Merge script for combining]]
##[[Media:CombineHAIRS.sh|Merge script for combining]]
##[[Daniel:Notebook/Haplotyping/HiCData|Hi-C Data Processing]] and [[Daniel:Notebook/Haplotyping/BACData|BAC Data Processing]]
##[[Daniel:Notebook/Haplotyping/HiCData|Hi-C Data Processing]] and [[Daniel:Notebook/Haplotyping/LFRData|LFR Data Processing]]
#Next, run hapcut in the log likelihood format
#Next, run hapcut in the log likelihood format
##[[Media:Llhapcut.sh|Llhapcut.lfrhic.sh]]
##[[Media:Llhapcut.sh|Llhapcut.lfrhic.sh]]

Latest revision as of 21:36, 9 December 2015

Processing LFR and Hi-C Data[edit]

Back to Notebook

This page describes the data processing for the LFR-HiC combined data in the haplotyping project. For data locations, visit the Data Map.

Processing[edit]

  1. The data starts as the uncombined hair files
    1. Merge script for combining
    2. Hi-C Data Processing and LFR Data Processing
  2. Next, run hapcut in the log likelihood format
    1. Llhapcut.lfrhic.sh