Ns126:Heyn2016: Difference between revisions

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=== Fastq to Bam ===
=== Fastq to Bam ===
=== Bam to Hapinfo ===
* Bam File Directory
* Bam File Directory
  TSCC: /home/ddiep/dinh_working/Bellvitge_BRI_WGBS/methylfiles/BAMfiles
  TSCC: /home/ddiep/dinh_working/Bellvitge_BRI_WGBS/methylfiles/BAMfiles
  Genome-miner:  /media/LTS_60T/Dinh/WGBS_LTS33/Hg19/Estellar_Bellvitge/BAMfiles
  Genome-miner:  /media/LTS_60T/Dinh/WGBS_LTS33/Hg19/Estellar_Bellvitge/BAMfiles
 
* Bam to hapinfo
=== Bam to Hapinfo ===
 


=== Haploinfo to Methylation Haplotype Block (MHB) ===
=== Haploinfo to Methylation Haplotype Block (MHB) ===

Revision as of 22:35, 4 March 2016

Background

Method

Sample

SRA Download

SRA to Fastq

Fastq to Bam

Bam to Hapinfo

  • Bam File Directory
TSCC: /home/ddiep/dinh_working/Bellvitge_BRI_WGBS/methylfiles/BAMfiles
Genome-miner:  /media/LTS_60T/Dinh/WGBS_LTS33/Hg19/Estellar_Bellvitge/BAMfiles
  • Bam to hapinfo


Haploinfo to Methylation Haplotype Block (MHB)

Hapinfo to Methylation Haplotype Load

trim_glore

Alignment