EricChu:LabNotesMDA/2016-2-26: Difference between revisions

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>Ericchu
(Created page with "* generating fastq from pileup to remap with reference to get vcf nohup /home/kunzhang/softwares/samtools-latest/samtools.pl pileup2fq PGP1_21_ch21.sorted.fragment.quality.pi...")
 
>Ericchu
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* generating fastq from pileup to remap with reference to get vcf
* generating consensus fastq from pileup to remap with reference to get vcf
  nohup /home/kunzhang/softwares/samtools-latest/samtools.pl pileup2fq PGP1_21_ch21.sorted.fragment.quality.pileup > PGP1_21_ch21.fq &
  nohup /home/kunzhang/softwares/samtools-latest/samtools.pl pileup2fq PGP1_21_ch24.sorted.fragment.quality.pileup > PGP1_21_ch24.fq &

Latest revision as of 19:25, 26 February 2016

  • generating consensus fastq from pileup to remap with reference to get vcf
nohup /home/kunzhang/softwares/samtools-latest/samtools.pl pileup2fq PGP1_21_ch24.sorted.fragment.quality.pileup > PGP1_21_ch24.fq &