EricChu:LabNotesMDA/2016-2-26: Difference between revisions
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>Ericchu (Created page with "* generating fastq from pileup to remap with reference to get vcf nohup /home/kunzhang/softwares/samtools-latest/samtools.pl pileup2fq PGP1_21_ch21.sorted.fragment.quality.pi...") |
>Ericchu No edit summary |
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* generating fastq from pileup to remap with reference to get vcf | * generating consensus fastq from pileup to remap with reference to get vcf | ||
nohup /home/kunzhang/softwares/samtools-latest/samtools.pl pileup2fq | nohup /home/kunzhang/softwares/samtools-latest/samtools.pl pileup2fq PGP1_21_ch24.sorted.fragment.quality.pileup > PGP1_21_ch24.fq & |
Latest revision as of 19:25, 26 February 2016
- generating consensus fastq from pileup to remap with reference to get vcf
nohup /home/kunzhang/softwares/samtools-latest/samtools.pl pileup2fq PGP1_21_ch24.sorted.fragment.quality.pileup > PGP1_21_ch24.fq &