Daniel:Notebook/ComboLock/2016-6-24: Difference between revisions
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>Djacobse |
>Djacobse |
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{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext> | {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext> | ||
|- style="background-color:#FCD5B4;font-size:12pt;font-weight:bold" align="center" | |- style="background-color:#FCD5B4;font-size:12pt;font-weight:bold" align="center" | ||
| width=" | | width="81" height="45" | Sample | ||
| width="65" | Lane | | width="65" | Lane | ||
| width="65" | Batch | | width="65" | Batch | ||
Line 37: | Line 37: | ||
| align="center" valign="bottom" | A1 | | align="center" valign="bottom" | A1 | ||
| align="center" valign="bottom" | B1 | | align="center" valign="bottom" | B1 | ||
| align="center" align="center" valign="bottom" | 2 | |||
| align="center" align="center" valign="bottom" | 25 | |||
| align="center" align="center" valign="bottom" | 1 | | align="center" align="center" valign="bottom" | 1 | ||
| align="center" align="center" valign="bottom" | | | align="center" align="center" valign="bottom" | 1 | ||
| align="center" align="center" valign="bottom" | | | align="center" align="center" valign="bottom" | 21 | ||
| align="center" align="center" valign="bottom" | 50 | | align="center" align="center" valign="bottom" | 50 | ||
Line 48: | Line 48: | ||
| align="center" valign="bottom" | A2 | | align="center" valign="bottom" | A2 | ||
| align="center" valign="bottom" | B2 | | align="center" valign="bottom" | B2 | ||
| align="center" align="center" valign="bottom" | 2 | |||
| align="center" align="center" valign="bottom" | 25 | |||
| align="center" align="center" valign="bottom" | 1 | | align="center" align="center" valign="bottom" | 1 | ||
| align="center" align="center" valign="bottom" | | | align="center" align="center" valign="bottom" | 1 | ||
| align="center" align="center" valign="bottom" | | | align="center" align="center" valign="bottom" | 21 | ||
| align="center" align="center" valign="bottom" | 50 | | align="center" align="center" valign="bottom" | 50 | ||
Line 59: | Line 59: | ||
| align="center" valign="bottom" | A3 | | align="center" valign="bottom" | A3 | ||
| align="center" valign="bottom" | B3 | | align="center" valign="bottom" | B3 | ||
| align="center" align="center" valign="bottom" | 2 | |||
| align="center" align="center" valign="bottom" | 25 | |||
| align="center" align="center" valign="bottom" | 1 | |||
| align="center" align="center" valign="bottom" | 1 | | align="center" align="center" valign="bottom" | 1 | ||
| align="center" align="center" valign="bottom" | | | align="center" align="center" valign="bottom" | 21 | ||
| align="center" align="center" valign="bottom" | 50 | | align="center" align="center" valign="bottom" | 50 | ||
|- style="background-color:#D9D9D9;font-size:12pt" | |- style="background-color:#D9D9D9;font-size:12pt" | ||
| height="15" valign="bottom" | Sample 4 | | height="15" valign="bottom" | Sample 4 | ||
| align="center" valign="bottom" | A4 | | align="center" valign="bottom" | A4 | ||
| align="center" valign="bottom" | B4 | | align="center" valign="bottom" | B4 | ||
| align="center" align="center" valign="bottom" | 2 | |||
| align="center" align="center" valign="bottom" | 25 | |||
| align="center" align="center" valign="bottom" | 1 | |||
| align="center" align="center" valign="bottom" | 1 | |||
| align="center" align="center" valign="bottom" | 21 | |||
| align="center" align="center" valign="bottom" | 50 | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | Sample 5 | |||
| align="center" valign="bottom" | A5 | |||
| align="center" valign="bottom" | B5 | |||
| align="center" align="center" valign="bottom" | 2 | |||
| align="center" align="center" valign="bottom" | 25 | |||
| align="center" align="center" valign="bottom" | 1 | |||
| align="center" align="center" valign="bottom" | 1 | | align="center" align="center" valign="bottom" | 1 | ||
| align="center" align="center" valign="bottom" | 21 | |||
| align="center" align="center" valign="bottom" | 50 | |||
|- style="background-color:#D9D9D9;font-size:12pt" | |||
| height="15" valign="bottom" | Sample 6 | |||
| align="center" valign="bottom" | A6 | |||
| align="center" valign="bottom" | B6 | |||
| align="center" align="center" valign="bottom" | 2 | |||
| align="center" align="center" valign="bottom" | 25 | | align="center" align="center" valign="bottom" | 25 | ||
| align="center" align="center" valign="bottom" | | | align="center" align="center" valign="bottom" | 1 | ||
| align="center" align="center" valign="bottom" | | | align="center" align="center" valign="bottom" | 1 | ||
| align="center" align="center" valign="bottom" | | | align="center" align="center" valign="bottom" | 21 | ||
| align="center" align="center" valign="bottom" | 50 | |||
|- style="font-size:12pt" | |||
| height="15" valign="bottom" | Sample 7 | |||
| align="center" valign="bottom" | A7 | |||
| align="center" valign="bottom" | B7 | |||
| align="center" align="center" valign="bottom" | 2 | |||
| align="center" align="center" valign="bottom" | 25 | |||
| align="center" align="center" valign="bottom" | 1 | |||
| align="center" align="center" valign="bottom" | 1 | |||
| align="center" align="center" valign="bottom" | 21 | |||
| align="center" align="center" valign="bottom" | 50 | |||
|- style="background-color:#D9D9D9;font-size:12pt" | |||
| height="15" valign="bottom" | Sample 8 | |||
| align="center" valign="bottom" | A8 | |||
| align="center" valign="bottom" | B8 | |||
| align="center" align="center" valign="bottom" | 2 | |||
| align="center" align="center" valign="bottom" | 25 | |||
| align="center" align="center" valign="bottom" | 1 | |||
| align="center" align="center" valign="bottom" | 1 | |||
| align="center" align="center" valign="bottom" | 21 | |||
| align="center" align="center" valign="bottom" | 50 | | align="center" align="center" valign="bottom" | 50 | ||
Revision as of 15:47, 24 June 2016
Stage 2 Test (Started yesterday)
Protocol
- Latch and Padlock Hybridization
- Heat inactivate enzyme by incubating for 2 minutes at 94C
- Exonuclease Digestion
- Prepare exonuclease I/III mix by mixing 2 uL exonuclease I (20 units/μL) and 10 uL exonuclease III (100 units/μL) in 1:1 ratio
- Add 2 μL of exonuclease I/III mix to reaction
- Mix the reaction by swirling pipette around the well 5 times
- Incubate reaction at 37 ºC for 2 hours
- Heat inactivate enzyme by incubating at 94C for 5 minutes
- qPCR
- Set up reaction according to table
- qPCR Cycles
- 95C 3 min
- 95C 3 sec
- 55C 30 sec
- 72C 20 sec
- plate read
- goto b x20
- 72C 2 min
- 16C hold
Sample | Lane | Batch | Cells | 2X Kapa SYBR qPCR MM | 100 uM Primer2 | 100 uM Primer4-RC | H2O | Total Volume (uL) |
Sample 1 | A1 | B1 | 2 | 25 | 1 | 1 | 21 | 50 |
Sample 2 | A2 | B2 | 2 | 25 | 1 | 1 | 21 | 50 |
Sample 3 | A3 | B3 | 2 | 25 | 1 | 1 | 21 | 50 |
Sample 4 | A4 | B4 | 2 | 25 | 1 | 1 | 21 | 50 |
Sample 5 | A5 | B5 | 2 | 25 | 1 | 1 | 21 | 50 |
Sample 6 | A6 | B6 | 2 | 25 | 1 | 1 | 21 | 50 |
Sample 7 | A7 | B7 | 2 | 25 | 1 | 1 | 21 | 50 |
Sample 8 | A8 | B8 | 2 | 25 | 1 | 1 | 21 | 50 |