Daniel:Notebook/ComboLock/2016-7-6: Difference between revisions

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>Djacobse
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=Antibody Stage 2 Test 2 (Started [[Daniel:Notebook/ComboLock/2016-7-6|6-28-2016]])=
=Antibody Stage 2 Test 2 (Started [[Daniel:Notebook/ComboLock/2016-6-28|6-28-2016]])=


Continued from results on [[Daniel:Notebook/ComboLock/2016-7-1|7-1-2016]]
Continued from results on [[Daniel:Notebook/ComboLock/2016-7-1|7-1-2016]]
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|}
|}
Sequencing Sample: '''DEJ-CL-P01'''
=C Probe SOD1/VIM Test (Started [[Daniel:Notebook/ComboLock/2016-6-29|6-29-2016]]=
Continued from [[Daniel:Notebook/ComboLock/2016-7-1|7-1]]. I added more human than mouse since I am more interested in the human samples (although it is still important to check the mouse).
{| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext>
|- style="background-color:#DDD9C4;font-size:12pt;font-weight:bold" align="center"
| width="88" height="30" |  Sample
| width="65" | ng/uL
| width="65" | uL added
| width="65" | final mass (ng)
|- style="font-size:12pt"
| height="15"  | Hs-Sample 2
| align="center" align="center" | 38.5
| align="center" align="center" valign="bottom" | 15
| align="center" align="center" valign="bottom" | 577.5
|- style="background-color:#D9D9D9;font-size:12pt"
| height="15"  | mm-Sample 4
| align="center" align="center" | 43.3
| align="center" align="center" valign="bottom" | 10
| align="center" align="center" valign="bottom" | 433
|}
Sequencing Sample: '''DEJ-CL-C02'''

Revision as of 16:45, 6 July 2016

Sequential Hybridization Test (Started yesterday)

Back to Calendar

Protocol

  1. Circularization
    1. Heat inactivate enzyme by incubating for 2 minutes at 94C
  2. Exonuclease Digestion
    1. Prepare exonuclease I/III mix by mixing 10 uL exonuclease I (20 units/μL) and 2 uL exonuclease III (100 units/μL) in 1:1 ratio
    2. Add 2 μL of exonuclease I/III mix to reaction
    3. Mix the reaction by swirling pipette around the well 5 times
    4. Incubate reaction at 37 ºC for 2 hours
    5. Heat inactivate enzyme by incubating at 94C for 5 minutes
  3. qPCR
    1. Set up reaction according to table
    2. Sample Lane Batch AmpR Index Cells 2X Kapa SYBR qPCR MM 100 uM AmpF 6.4 10 uM AmpR6.3-IndXX H2O Total Volume (uL)
      Sample 1 A1 B1 22 2 25 0.5 5 17.5 50
      Sample 2 A2 B2 23 2 25 0.5 5 17.5 50
      Sample 3 A3 B3 24 2 25 0.5 5 17.5 50
      Sample 4 A4 B4 25 2 25 0.5 5 17.5 50
      Sample 5 A5 B5 26 2 25 0.5 5 17.5 50
      Sample 6 A6 NTC 27 2 25 0.5 5 19.5 50
    3. Master Mix
      1. 165 uL KAPA SyberFast MM
      2. 116 uL nfH2O
      3. 3.3 uL AmpF 6.4
    4. Add 43 uL Master Mix to each well
    5. qPCR Cycles
      1. 95C 3 min
      2. 95C 3 sec
      3. 55C 30 sec
      4. 72C 20 sec
      5. plate read
      6. goto b x20
      7. 72C 2 min
      8. 16C hold

    qPCR Results

    Antibody Stage 2 Test 2 (Started 6-28-2016)

    Continued from results on 7-1-2016

    Source ng/uL uL added final mass (ng)
    Ab1 15 20 300

    Sequencing Sample: DEJ-CL-P01

    C Probe SOD1/VIM Test (Started 6-29-2016

    Continued from 7-1. I added more human than mouse since I am more interested in the human samples (although it is still important to check the mouse).

    Sample ng/uL uL added final mass (ng)
    Hs-Sample 2 38.5 15 577.5
    mm-Sample 4 43.3 10 433

    Sequencing Sample: DEJ-CL-C02