Our own data alignment and analysis: Difference between revisions

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>Shicheng
(Created page with " === fastq merge by indx === for i in {01,02,04,05,06,07,09,10,11,12} do cat s_*_1_Indx$i.txt.gz > Indx$i.read1.fq.gz & cat s_*_2_Indx$i.txt.gz > Indx$i.read2.fq.gz & d...")
 
>Shicheng
No edit summary
Line 14: Line 14:


=== bismark alignment ===
=== bismark alignment ===
=== RD>10 Regions ===

Revision as of 23:51, 31 August 2016


fastq merge by indx

for i in {01,02,04,05,06,07,09,10,11,12}
do
cat s_*_1_Indx$i.txt.gz > Indx$i.read1.fq.gz &
cat s_*_2_Indx$i.txt.gz > Indx$i.read2.fq.gz &
done

Trim_galore

bismark alignment

RD>10 Regions