Kun:LabNotes/ExonomeSeq/2009-4-1: Difference between revisions
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(New page: ==Data analysis of shotgun sequencing data== *Two libraries were made by Alice. The capturing reactions were done with J...) |
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==Data analysis of shotgun sequencing data== | ==Data analysis of shotgun sequencing data== | ||
*Two libraries were made by [[Alice:LabNotes/2009-3-13|Alice]]. [[Kun:LabNotes/ExonomeSeq/2009-3-3 | The capturing reactions]] were done with Jan09 #1-3 probe set (150k) on PGP1. | *Two libraries were made by [[Alice:LabNotes/2009-3-13|Alice]]. [[Kun:LabNotes/ExonomeSeq/2009-3-3 | The capturing reactions]] were done with Jan09 #1-3 probe set (150k) on PGP1. | ||
*s3: 9707995 raw reads, 40bp, 7655774 (79%) mappable (SOAP2 to hg18) | *s3 (PGP1-CTRL): 9707995 raw reads, 40bp, 7655774 (79%) mappable (SOAP2 to hg18) | ||
*s4: 9424752 raw reads, 40bp, 7561445 (80%) mappable (SOAP2 to hg18) | *s4 (PGP1-Shaked): 9424752 raw reads, 40bp, 7561445 (80%) mappable (SOAP2 to hg18) | ||
==Questions to answer== | ==Questions to answer== | ||
===Was the library construction successful?=== | ===Was the library construction successful?=== |
Revision as of 21:05, 1 April 2009
Data analysis of shotgun sequencing data
- Two libraries were made by Alice. The capturing reactions were done with Jan09 #1-3 probe set (150k) on PGP1.
- s3 (PGP1-CTRL): 9707995 raw reads, 40bp, 7655774 (79%) mappable (SOAP2 to hg18)
- s4 (PGP1-Shaked): 9424752 raw reads, 40bp, 7561445 (80%) mappable (SOAP2 to hg18)