Sample record: Difference between revisions

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| August||05||Control||s8,PhiX|| -||Zhang Lab||Illumina||40bp||20,078,536||19,817,515
| August||05||Control||s8,PhiX|| -||Zhang Lab||Illumina||40bp||20,078,536||19,817,515
|-
|-
| August||13||Exome(end-sequencing)||PGP2S-Phu||54.5nM||Zhang lab||[[Alice:LabNotes/2009-8-6|Alice Li]]||
| August||13||Exome||NA12878||-||Zhang lab||Billy||40bp||15,666,228||
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| August||13||Exome(end-sequencing)||PGP2S-iProof||60.6nM||Zhang lab||[[Alice:LabNotes/2009-8-6|Alice Li]]||
| August||13||Exome||NA12878||-||Zhang lab||Billy||40bp||14,091,504||
|-
| August||13||Cpg97k||Par1||-||Zhang lab||[[Jie:LabNotes/CpgSeq/2009-8-5|Jie Deng]]||10,385,536||3,005,889
|-
| August||13||Cpg97k||Par9||-||Zhang lab||[[Jie:LabNotes/CpgSeq/2009-8-5|Jie Deng]]||7,537,771||3,430,524
|-
| August||13||USC-Hsieh||MH010B xMboI||-||Zhang lab||Kyle||6,699,431||6,125,263
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| August||13||USC-Hsieh||MH010B xDpnI||-||Zhang lab||Kyle||2,204,512||2,094,844
|-
| August||13||Exome(end-sequencing)||PGP2S-Phu||54.5nM||Zhang lab||[[Alice:LabNotes/2009-8-6|Alice Li]]||7,022,465||5,950,793
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| August||13||Exome(end-sequencing)||PGP2S-iProof||60.6nM||Zhang lab||[[Alice:LabNotes/2009-8-6|Alice Li]]||5,798,969||4,756,952
|-
|-
|}
|}

Revision as of 19:00, 18 August 2009

  • 2009
Month Date Probe Set Tube label Conc. x vol. Seq facility Lib. Const. Read length # filtered reads # mappable reads
Feb 6 CpG30k_paired end BJ 75.4nM x 15ul; BioGem Jie 36bp x 2 7,662,828 2,535,784
Feb 6 CpG30k_paired end Hybrid_1 87.6nM x 15ul; BioGem Jie 36bp x 2 6,829,142 1,946,531
Feb 6 CpG30k_paired end PGP1_F 106nM x 15ul; BioGem Jie 36bp x 2 8,441,376 2,854,604
Feb 6 CpG30k_paired end HUES12 74.9nM x 15ul; BioGem Jie 36bp x 2 7,404,514 1,424,697
Feb 6 CpG30k_paired end PGP1_iPS1 90.3nM x 15ul; BioGem Jie 36bp x 2 5,617,832 1,899,427
Feb 6 CpG30k_paired end PGP1_L 77.6nM x 15ul; BioGem Jie 36bp x 2 5,258,188 2,220,886
Feb 6 CpG30k_paired end PGP3_L 80.9nM x 15ul; BioGem Jie 36bp x 2 5,286,442 1,838,971
Feb 6 CpG30k_paired end PGP9_L 96.9nM x 15ul; BioGem Jie 36bp x 2 5,689,552 2,292,028
March 13 Exome PGP1-CTRL 48.5ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,707,995 7,655,774
March 13 Exome PGP1-shaked 46ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,424,752 7,561,445
May 25 Exome PGP1E0509A 77nM; 40ul BioGem Alice Li 76bp 7,471,741 1,086,264
May 25 Exome PGP2E0509A 64nM; 40ul BioGem Alice Li 76bp 5,014,823 2,595,521
May 25 Exome PGP3E0509A 49.5nM; 40ul BioGem Alice Li 76bp 5,358,442 3,213,790
May 25 Exome NA12878E0509A 60nM; 40ul BioGem Alice Li 76bp 7,360,495 2,673,495
May 25 Exome PGP1E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,520,981 2,350,708
May 25 Exome PGP2E0509k 20nM; 40ul BioGem Kun Zhang 76bp 5,095,881 2,568,349
May 25 Exome PGP3E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,734,068 1,989,542
May 25 Exome NA12878E0509k 33nM; 40ul BioGem Kun Zhang 76bp 3,900,764 778,134
May 26 cpg97K_end sequencing NA21070*1 100406 captured targets 25.3ng/ul (96nM) x 15ul; Yuan Gao Jie/Kun 40bp 2,535,463
May 26 cpg97K_end sequencing NA21070*1 100406 normalized captured targets 23.1ng/ul (87nM) x 15ul; Yuan Gao Jie/Kun 40bp 2,377,687
May 29 Exome(end sequencing) PGP2_052909A 111nM; 15ul Yuan Gao Alice Li 40bp 6,390,979
May 29 Exome(end sequencing) PGP3_052909A 126nM; 15ul Yuan Gao Alice Li 40bp 6,110,991
June 4 Exome PGP5-1-060809 62.5nM; 10ul BioGem Alice Li 36bp 14,404,283 10,812,047
June 4 Exome PGP5-2-060809 65.7nM; 10ul BioGem Alice Li 36bp 14,994,770 11,253,456
June 4 Exome PGP7-1-060809 75.5nM; 10ul BioGem Alice Li 36bp 13,384,832 9,712,648
June 4 Exome PGP7-2-060809 79.7nM; 20ul BioGem Alice Li 36bp 14,204,382/13,509,137 10,519,374/9,961,481
June 8 cpg97k DF6-9-9_P16(4) 11nM x 10ul x 2 lanes; BioGem Jie 36bp 4,688,926
June 8 cpg97k foreskin 15nM x 10ul x 1 lane. BioGem Jie 36bp 3,320,865 1,825,557
June 10 Exome PGP1-3-061009 34nM; 15ul Bing Ren Alice Li 76bp 5,802,565
June 10 Exome PGP2-3-061009 25nM; 15ul Bing Ren Alice Li 76bp 3,193,644
June 10 Exome PGP3-3-061009 22nM; 15ul Bing Ren Alice Li 76bp 2,465,788
June 10 Exome NA12878-3-061009 22nM; 15ul Bing Ren Alice Li 76bp 1,285,265
June 10 cpg97k NA21070*1_100406_97k 21.2nM x 14ul; Bing Ren Jie 76bp 2,682,703 424,191
June 10 cpg30k DF6-9-9_P16(4)_30k 21.2nM x 14ul; Bing Ren Jie 76bp 918,811 151,519
June 10 cpg30k foreskin_30k 21.2nM x 14ul; Bing Ren Jie 76bp 424,770 65,177
June 18 Exome PGP5-1-060809 62.5nM; 5ul Bing Ren Alice Li 41bp 4,122,460
June 18 Exome PGP5-2-060809 65.7nM; 5ul Bing Ren Alice Li 41bp 3,907,906
June 18 Exome PGP7-1-060809 75.5nM; 5ul Bing Ren Alice Li 41bp 1,419,496
June 18 CES27k9bp_end sequening Hybrid_1_CES27k9bp 4.3ng/ul (37nM) x 5ul Bing Ren Jie 41bp 7,484,832
June 18 CES27k9bp_end sequening BJ_CES27k9bp 7.2ng/ul (62nM) x 5ul Bing Ren Jie 41bp 5,643,984
June 18 cpg97k DF6-9-9_P16(4)_97k_repeat 11nM x 5ul Bing Ren Jie 41bp 4,761,133
June 18 cpg97k foreskin_97k_repeat 7.5nM x 5ul Bing Ren Jie 41bp 6,683,303
August 05 Exome s1,DF6-9-9 - Zhang Lab Alice 40bp 4,417,586 2,288,789
August 05 Exome s2,Foreskin - Zhang Lab Alice 40bp 5,020,353 3,214,546
August 05 Exome s3,Foreskin-lig - Zhang Lab Alice 40bp 6,660,328 3,119,331
August 05 Exome s4,NA12878 - Zhang Lab Alice 40bp 3,727,520 1,981,326
August 05 Exome s5,NA12878-lig - Zhang Lab Alice 40bp 6,455,281 3,253,093
August 05 Exome s6,NA12878 - Zhang Lab Billy 40bp 14,992,076 8,643,897
August 05 Exome s7,PGP10 - Zhang Lab Billy 40bp 19,423,381 11,040,240
August 05 Control s8,PhiX - Zhang Lab Illumina 40bp 20,078,536 19,817,515
August 13 Exome NA12878 - Zhang lab Billy 40bp 15,666,228
August 13 Exome NA12878 - Zhang lab Billy 40bp 14,091,504
August 13 Cpg97k Par1 - Zhang lab Jie Deng 10,385,536 3,005,889
August 13 Cpg97k Par9 - Zhang lab Jie Deng 7,537,771 3,430,524
August 13 USC-Hsieh MH010B xMboI - Zhang lab Kyle 6,699,431 6,125,263
August 13 USC-Hsieh MH010B xDpnI - Zhang lab Kyle 2,204,512 2,094,844
August 13 Exome(end-sequencing) PGP2S-Phu 54.5nM Zhang lab Alice Li 7,022,465 5,950,793
August 13 Exome(end-sequencing) PGP2S-iProof 60.6nM Zhang lab Alice Li 5,798,969 4,756,952