AlanFung:Protocol/Genome Analyzer: Difference between revisions
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if selected the first cycle is generated by the software | if selected the first cycle is generated by the software | ||
*enable runbrowser report emails to sens reports to the email addresses specified | *enable runbrowser report emails to sens reports to the email addresses specified | ||
*after you have finished selecting the settings in the run parameters window, click <save & continue>/<cancel & continue>/<reset default configs> | |||
===initialize the software=== | |||
*click the manual control/setup tab | |||
*perform any operation to trigger the genome analyzer initialization | |||
===run window=== | |||
====recipe tab==== | |||
*hover over a stop to show the parameters specific to that step | |||
====image cycletab==== | |||
white tile are queued for imaging | |||
blue tiles haven been imaged | |||
gray tiles are not defined in the current run | |||
rught side of the window shows the photographs being taken of the current tile | |||
====temperature tab==== | |||
*for monitor various run temperatures | |||
===manual control/setup window=== | |||
====manual control==== | |||
==Cluster Station== | ==Cluster Station== |
Revision as of 13:40, 21 July 2009
Genome Analyzer User Guide
SCS v2.4
- start up scsv2.4
setting the run parameters
- click <view>
- clear box next to show on start up
- from the data collection screen
- edit|run parameters|GA Settings / RunBrowser Settings
GA Setting
- specify the network location for run results
- set perferences for real time analysis results
- set settings for auto calibration
*delete images (select this option to delete images from the genome analyzer computer after analysis
Validation strings
- edit if you are using a customized identification system
Use auto calibration
- select this option to enable the auto calibration feature
- refer to page 29 for a description of the auto calibration feature
- note: if this option is cleared, focus calibration must be performed manually as described in appendix B
Run Browser Settings
- runbrowzer reports, specify which runbrowser reports you want to show and export
if selected the first cycle is generated by the software
- enable runbrowser report emails to sens reports to the email addresses specified
- after you have finished selecting the settings in the run parameters window, click <save & continue>/<cancel & continue>/<reset default configs>
initialize the software
- click the manual control/setup tab
- perform any operation to trigger the genome analyzer initialization
run window
recipe tab
- hover over a stop to show the parameters specific to that step
image cycletab
white tile are queued for imaging blue tiles haven been imaged gray tiles are not defined in the current run rught side of the window shows the photographs being taken of the current tile
temperature tab
- for monitor various run temperatures