Ylaine/2009-8-26: Difference between revisions
Jump to navigation
Jump to search
>Ylaine (New page: ==Clustering== * Re-ran clustering with similar results. Only difference is 1 false SNP that was accepted in the first round instead of the second round. Image:Aug17_nodbSNP.jpg [[Imag...) |
>Ylaine |
||
Line 5: | Line 5: | ||
[[Image:Aug17_cluster2.jpg]] | [[Image:Aug17_cluster2.jpg]] | ||
* Commands: | * Commands: | ||
[error, groups] = snpCluster(match,miss); | |||
** 328 accepted, 3102 rejected, total error rate of 8.45% (46.46% MD, 1.42% FP) | |||
** 287 true and 41 false | |||
groups_match = groups(1:536); | |||
rejects_match = match(find(groups_match==2),:); | |||
groups_miss = groups(537:3430); | |||
rejects_miss = miss(find(groups_miss==2),:); | |||
[error, groups2] = snpCluster(rejects_match, rejects_miss); | |||
** 214 accepted, 2888 rejected, total error rate of 6.61% (48.19% MD, 2.98% FP) | |||
** 129 true and 85 false | |||
* Validate method on another test set | * Validate method on another test set |
Revision as of 21:23, 26 August 2009
Clustering
- Re-ran clustering with similar results. Only difference is 1 false SNP that was accepted in the first round instead of the second round.
File:Aug17 nodbSNP.jpg File:Aug17 cluster1.jpg File:Aug17 cluster2.jpg
- Commands:
[error, groups] = snpCluster(match,miss);
- 328 accepted, 3102 rejected, total error rate of 8.45% (46.46% MD, 1.42% FP)
- 287 true and 41 false
groups_match = groups(1:536); rejects_match = match(find(groups_match==2),:); groups_miss = groups(537:3430); rejects_miss = miss(find(groups_miss==2),:); [error, groups2] = snpCluster(rejects_match, rejects_miss);
- 214 accepted, 2888 rejected, total error rate of 6.61% (48.19% MD, 2.98% FP)
- 129 true and 85 false
- Validate method on another test set
False Negatives
Poster
- Determine whom to acknowledge for experimental results