Athurva Gore/LabNotes/2009-9-23: Difference between revisions
Jump to navigation
Jump to search
>Ajgore No edit summary |
>Ajgore |
||
Line 11: | Line 11: | ||
=Exome Project= | =Exome Project= | ||
* Need to check coverage with combined reads. | * Need to check coverage with combined reads. | ||
** On genome-miner, combining reads into one file. Then run mapping. What regions do we cover? Extract ranges from pileup file, see what Exons we miss consistently. | |||
** Get average coverage for each exon? | |||
* Do we get any regions with very low coverage? These will need to be redone. | * Do we get any regions with very low coverage? These will need to be redone. |
Latest revision as of 23:29, 23 September 2009
[edit]
Presentation[edit]
- September 23 Lab Meeting:
- http://docs.google.com/present/edit?id=0AZnKSQ9Jqu6_ZDVqcWd6cF85OGRmaHdiaGdu&hl=en
Probe Generation[edit]
- Baylor CaptureProbe set is done.
- Uploaded to Wiki at: [[1]]
- Email Dr. Zhang so he can order probes.
Exome Project[edit]
- Need to check coverage with combined reads.
- On genome-miner, combining reads into one file. Then run mapping. What regions do we cover? Extract ranges from pileup file, see what Exons we miss consistently.
- Get average coverage for each exon?
- Do we get any regions with very low coverage? These will need to be redone.