Athurva Gore/LabNotes/2009-9-23: Difference between revisions

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=Exome Project=
=Exome Project=
* Need to check coverage with combined reads.
* Need to check coverage with combined reads.
** On genome-miner, combining reads into one file.  Then run mapping.  What regions do we cover?  Extract ranges from pileup file, see what Exons we miss consistently.
** Get average coverage for each exon?
* Do we get any regions with very low coverage?  These will need to be redone.
* Do we get any regions with very low coverage?  These will need to be redone.

Latest revision as of 23:29, 23 September 2009

Navigation[edit]

Presentation[edit]

Probe Generation[edit]

  • Baylor CaptureProbe set is done.
  • Uploaded to Wiki at: [[1]]
  • Email Dr. Zhang so he can order probes.

Exome Project[edit]

  • Need to check coverage with combined reads.
    • On genome-miner, combining reads into one file. Then run mapping. What regions do we cover? Extract ranges from pileup file, see what Exons we miss consistently.
    • Get average coverage for each exon?
  • Do we get any regions with very low coverage? These will need to be redone.