Illumina GA/Oligo info: Difference between revisions

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>Sam Chiang
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*[[Media:Amplification-free Illumina sequencing-library preparation facilatates improved mapping and assembly of GC biased genomes.pdf|[1] Amplification-free Illumina sequencing-library preparation facilatates improved mapping and assembly of GC biased genomes]]
**[[Media:Amplification-free Illumina sequencing-library preparation facilatates improved mapping and assembly of GC biased genomes-supp.pdf|[1] supp]]
*[[Media:Improved protocols for the Illumina GA.pdf|[2] Improved protocols for the Illumina GA]]

Revision as of 18:21, 4 January 2010

Name in original paper Nick-name Sequence (5\'->3\') Sequence Modification Reference
A_adapter_t Long Y-adaptor (top) AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATC*T 3'-Phosphorothioate bond [1]
A_adapter_b Long Y-adaptor (bottom) GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTG None [1]
PE_t_adapter Regular Y-adaptor (top) ACACTCTTTCCCTACACGACGCTCTTCCGATC*T 3'-Phosphorothioate bond [2]
PE_b_adapter Regular Y-adaptor (bottom) \\5phos\\GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG 5'-phosphorylation [2]
PCR_F Sol. Amp. (Forward) AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATC*T 3'-Phosphorothioate bond [2]
PCR_R Sol. Amp. (Reward) CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATC*T 3'-Phosphorothioate bond [2]
Syb_FP5 Sol. Quant. (Forward) ATGATACGGCGACCACCGAG None [2]
Syb_RP7 Sol. Quant. (Reward) CAAGCAGAAGACGGCATACGAG None [2]