Athurva Gore/LabNotes/2010-1-27: Difference between revisions
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>Ajgore (Created page with '=PGP Data= ====HL034 PGP5 Data==== * Got some new PGP5 data from HL034 ** Dr. Zhang tried to map it; ended up with a very low dbSNP percentage (~70%) * Can we fix it with some tr…') |
>Ajgore |
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** Merged it into the previous data | ** Merged it into the previous data | ||
** Got the following results: | ** Got the following results: | ||
{| {{table}} | {| {{table}} | ||
| align="center" style="background:#f0f0f0;"|'''HL013+HL025 (Sliding Trimmer 5):''' | | align="center" style="background:#f0f0f0;"|'''HL013+HL025 (Sliding Trimmer 5):''' | ||
| align="center" style="background:#f0f0f0;"|'''''' | | align="center" style="background:#f0f0f0;"|'''''' | ||
| align="center" style="background:#f0f0f0;"|'''HL013+HL025+ | | align="center" style="background:#f0f0f0;"|'''HL013+HL025+HL034, Sliding Trimmer 5:''' | ||
| align="center" style="background:#f0f0f0;"|'''''' | | align="center" style="background:#f0f0f0;"|'''HL013+HL025+HL034, Sliding Trimmer 10:''' | ||
|- | |- | ||
| dbSNP||4071||8643||8093 | | dbSNP||4071||8643||8093 |
Revision as of 23:50, 27 January 2010
PGP Data
HL034 PGP5 Data
- Got some new PGP5 data from HL034
- Dr. Zhang tried to map it; ended up with a very low dbSNP percentage (~70%)
- Can we fix it with some trimming?
- Tried sliding trimmer 5 and 10
- Merged it into the previous data
- Got the following results:
HL013+HL025 (Sliding Trimmer 5): | ' | HL013+HL025+HL034, Sliding Trimmer 5: | HL013+HL025+HL034, Sliding Trimmer 10: |
dbSNP | 4071 | 8643 | 8093 |
notdbSNP | 207 | 638 | 486 |
dbSNP% | 95.16% | 93.13% | 94.34% |