Dinh/NOTES/2010-4-22: Difference between revisions

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* Outliers in hierarchical clustering
* Outliers in hierarchical clustering
01373A17.methylFreqv01373B09.methylFreq.chisqResults.txt Total DMRs: 3810 Candidate DMRs: 12333 Rate:0.309
05215A18.methylFreqv05215B09.methylFreq.chisqResults.txt Total DMRs: 183 Candidate DMRs: 10777 Rate:0.017
05359A17.methylFreqv05359B09.methylFreq.chisqResults.txt Total DMRs: 5679 Candidate DMRs: 23044 Rate:0.246
07292A17.methylFreqv07292B09.methylFreq.chisqResults.txt Total DMRs: 3795 Candidate DMRs: 22014 Rate:0.172
09123A17.methylFreqv09123B09.methylFreq.chisqResults.txt Total DMRs: 411 Candidate DMRs: 16051 Rate:0.026
09351A17.methylFreqv09351B09.methylFreq.chisqResults.txt Total DMRs: 430 Candidate DMRs: 15134 Rate:0.028
09491A17.methylFreqv09491B09.methylFreq.chisqResults.txt Total DMRs: 1209 Candidate DMRs: 19802 Rate:0.061
11306A18.methylFreqv11306B09.methylFreq.chisqResults.txt Total DMRs: 550 Candidate DMRs: 15639 Rate:0.035
13066A17.methylFreqv13066B09.methylFreq.chisqResults.txt Total DMRs: 506 Candidate DMRs: 7315 Rate:0.069
05192A18.methylFreqv05192B09.methylFreq.chisqResults.txt Total DMRs: 168 Candidate DMRs: 16196 Rate:0.010
01373A17.methylFreqv01373B09.methylFreq.chisqResults.txt Total DMRs: 4490 Candidate DMRs: 50523 Rate:0.089
05215A18.methylFreqv05215B09.methylFreq.chisqResults.txt Total DMRs: 251 Candidate DMRs: 43966 Rate:0.006
05359A17.methylFreqv05359B09.methylFreq.chisqResults.txt Total DMRs: 7005 Candidate DMRs: 75668 Rate:0.093
07292A17.methylFreqv07292B09.methylFreq.chisqResults.txt Total DMRs: 4671 Candidate DMRs: 90738 Rate:0.051
09123A17.methylFreqv09123B09.methylFreq.chisqResults.txt Total DMRs: 547 Candidate DMRs: 84610 Rate:0.006
09351A17.methylFreqv09351B09.methylFreq.chisqResults.txt Total DMRs: 567 Candidate DMRs: 82427 Rate:0.007
09491A17.methylFreqv09491B09.methylFreq.chisqResults.txt Total DMRs: 2169 Candidate DMRs: 89534 Rate:0.024
11306A18.methylFreqv11306B09.methylFreq.chisqResults.txt Total DMRs: 739 Candidate DMRs: 86460 Rate:0.009
13066A17.methylFreqv13066B09.methylFreq.chisqResults.txt Total DMRs: 830 Candidate DMRs: 33957 Rate:0.024
05192A18.methylFreqv05192B09.methylFreq.chisqResults.txt Total DMRs: 189 Candidate DMRs: 78819 Rate:0.002

Latest revision as of 01:10, 14 May 2010

Paired Chi Square Test for Breast Cancer Samples from Same Individuals[edit]

Sample Code DM CpGs CpGs Tested Rate
5192 Diet Change 189 78819 0.24%
5215 Diet Change 251 43966 0.57%
9123 Diet Change 547 84610 0.65%
9351 No Diet Change 567 82427 0.69%
11306 No Diet Change 739 86460 0.85%
9491 Diet Change 2169 89534 2.42%
13066 No Diet Change 830 33957 2.44%
7292 No Diet Change 4671 90738 5.15%
1373* No Diet Change 4490 50523 8.89%
5359* Diet Change 7005 75668 9.26%
  • Outliers in hierarchical clustering

01373A17.methylFreqv01373B09.methylFreq.chisqResults.txt Total DMRs: 3810 Candidate DMRs: 12333 Rate:0.309 05215A18.methylFreqv05215B09.methylFreq.chisqResults.txt Total DMRs: 183 Candidate DMRs: 10777 Rate:0.017 05359A17.methylFreqv05359B09.methylFreq.chisqResults.txt Total DMRs: 5679 Candidate DMRs: 23044 Rate:0.246 07292A17.methylFreqv07292B09.methylFreq.chisqResults.txt Total DMRs: 3795 Candidate DMRs: 22014 Rate:0.172 09123A17.methylFreqv09123B09.methylFreq.chisqResults.txt Total DMRs: 411 Candidate DMRs: 16051 Rate:0.026 09351A17.methylFreqv09351B09.methylFreq.chisqResults.txt Total DMRs: 430 Candidate DMRs: 15134 Rate:0.028 09491A17.methylFreqv09491B09.methylFreq.chisqResults.txt Total DMRs: 1209 Candidate DMRs: 19802 Rate:0.061 11306A18.methylFreqv11306B09.methylFreq.chisqResults.txt Total DMRs: 550 Candidate DMRs: 15639 Rate:0.035 13066A17.methylFreqv13066B09.methylFreq.chisqResults.txt Total DMRs: 506 Candidate DMRs: 7315 Rate:0.069 05192A18.methylFreqv05192B09.methylFreq.chisqResults.txt Total DMRs: 168 Candidate DMRs: 16196 Rate:0.010

01373A17.methylFreqv01373B09.methylFreq.chisqResults.txt Total DMRs: 4490 Candidate DMRs: 50523 Rate:0.089 05215A18.methylFreqv05215B09.methylFreq.chisqResults.txt Total DMRs: 251 Candidate DMRs: 43966 Rate:0.006 05359A17.methylFreqv05359B09.methylFreq.chisqResults.txt Total DMRs: 7005 Candidate DMRs: 75668 Rate:0.093 07292A17.methylFreqv07292B09.methylFreq.chisqResults.txt Total DMRs: 4671 Candidate DMRs: 90738 Rate:0.051 09123A17.methylFreqv09123B09.methylFreq.chisqResults.txt Total DMRs: 547 Candidate DMRs: 84610 Rate:0.006 09351A17.methylFreqv09351B09.methylFreq.chisqResults.txt Total DMRs: 567 Candidate DMRs: 82427 Rate:0.007 09491A17.methylFreqv09491B09.methylFreq.chisqResults.txt Total DMRs: 2169 Candidate DMRs: 89534 Rate:0.024 11306A18.methylFreqv11306B09.methylFreq.chisqResults.txt Total DMRs: 739 Candidate DMRs: 86460 Rate:0.009 13066A17.methylFreqv13066B09.methylFreq.chisqResults.txt Total DMRs: 830 Candidate DMRs: 33957 Rate:0.024 05192A18.methylFreqv05192B09.methylFreq.chisqResults.txt Total DMRs: 189 Candidate DMRs: 78819 Rate:0.002