Dinh/NOTES/2010-7-24: Difference between revisions
Jump to navigation
Jump to search
>Dinh mNo edit summary |
>Dinh mNo edit summary |
||
Line 68: | Line 68: | ||
'''3_bc_matrix.txt''' | '''3_bc_matrix.txt''' | ||
#Combine 01373A17 1 & 2 | #Combine 01373A17 1 & 2 | ||
#Combine 01192B09 | #Combine 01192B09 1 & 2 | ||
#Use 01373B09.2 and 07292B09.2 | #Use 01373B09.2 and 07292B09.2 |
Latest revision as of 22:52, 26 July 2010
BSPP Data from HL064[edit]
File | Total | #Mapped | Total F&R | % Mapped |
s1 - BJiPS.DMR220K.txt.fwd.soap.out | 19284556 | 8715423 | 15348294 | 0.795885266946255 |
s1 - BJiPS.DMR220K.txt.rev.soap.out | 19284556 | 6632871 | ||
s3 - PGP1iPS.97K.txt.fwd.soap.out | 18278561 | 6647739 | 13048545 | 0.713871567898589 |
s3 - PGP1iPS.97K.txt.rev.soap.out | 18278561 | 6400806 | ||
s4 - PGP1fib.97K.txt.fwd.soap.out | 14865064 | 4765887 | 9475863 | 0.637458607645416 |
s4 - PGP1fib.97K.txt.rev.soap.out | 14865064 | 4709976 | ||
s5 - 01192B09.txt.fwd.soap.out | 17014633 | 4497325 | 8909772 | 0.523653492849361 |
s5 - 01192B09.txt.rev.soap.out | 17014633 | 4412447 | ||
s6 - 01373A17.txt.fwd.soap.out | 17755423 | 6140866 | 11995320 | 0.675586270177849 |
s6 - 01373A17.txt.rev.soap.out | 17755423 | 5854454 | ||
s7 - 01373B09.txt.fwd.soap.out | 16901995 | 5794389 | 11360060 | 0.672113558192391 |
s7 - 01373B09.txt.rev.soap.out | 16901995 | 5565671 | ||
s8 - 07292B09.txt.fwd.soap.out | 18621718 | 7544808 | 15108002 | 0.81131085756964 |
s8 - 07292B09.txt.rev.soap.out | 18621718 | 7563194 |
File | CpG Covered >=10x | Average Coverage |
01192B09.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt | 94313 | 33.2471027323911 |
01373A17.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt | 90615 | 35.0399492357777 |
01373B09.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt | 103324 | 34.6895106654795 |
07292B09.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt | 99666 | 36.7683262095399 |
BJiPS.DMR220K.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt | 12 | 11.3333333333333 |
PGP1fib.97K.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt | 80301 | 33.4409285064943 |
PGP1iPS.97K.txt.clean.soap.fwd.out.fwd.pileup.methylFreq.BED.txt | 141707 | 34.4084413614006 |
F & R Methyl Freq Correlation: (B1) 01192B09-2: r^2=0.9453 (B3) 01373A17-2: r^2=0.9418 (B4) 01373B09-2: r^2=0.9535 (B14)07292B09-2: r^2=0.939
File:Hcorcluster-0 bc matrix.png File:Hcorcluster-2 bc matrix.png
3_bc_matrix.txt
- Combine 01373A17 1 & 2
- Combine 01192B09 1 & 2
- Use 01373B09.2 and 07292B09.2